Factsheet for Bra016304.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY46423	Canola	cytosol	97.83	95.25
Bra024664.1-P	Field mustard	cytosol	76.96	79.11
AT1G27060.1	Thale cress	cytosol	79.4	75.91
VIT_01s0026g01520.t01	Wine grape	cytosol	58.27	54.29
Solyc05g006940.2.1	Tomato	cytosol	55.83	52.28
PGSC0003DMT400045467	Potato	cytosol	56.1	52.14
GSMUA_Achr6P29750_001	Banana	cytosol	52.57	48.87
Os01t0777800-01	Rice	cytosol	50.14	46.13
TraesCS3D01G312300.1	Wheat	cytosol	49.32	44.72
TraesCS3B01G347100.2	Wheat	cytosol	49.05	44.47
OQU87663	Sorghum	cytosol	48.51	44.31
Zm00001d043280_P001	Maize	cytosol	48.78	44.12
TraesCS3A01G319000.1	Wheat	cytosol	48.51	43.66
HORVU3Hr1G076310.2	Barley	cytosol, mitochondrion, nucleus	49.05	39.87
KRH74759	Soybean	nucleus	59.35	38.9
KRH69375	Soybean	nucleus	59.89	37.39
Bra008654.1-P	Field mustard	cytosol	26.56	24.69
Bra021435.1-P	Field mustard	cytosol	25.47	23.98
Bra024242.1-P	Field mustard	cytosol	26.29	23.6
Bra028647.1-P	Field mustard	mitochondrion	27.91	23.57
Bra037755.1-P	Field mustard	cytosol	25.47	22.6
Bra029198.1-P	Field mustard	cytosol	24.93	22.33
Bra013002.1-P	Field mustard	mitochondrion	22.76	18.96
Bra039169.1-P	Field mustard	cytosol	23.31	18.26
Bra027244.1-P	Field mustard	cytosol	22.76	17.14
Bra004253.1-P	Field mustard	plastid	21.95	15.64
Bra025182.1-P	Field mustard	cytosol	21.95	15.31
Bra017335.1-P	Field mustard	cytosol	21.95	15.25
Bra004074.1-P	Field mustard	cytosol, plastid	21.41	15.22
Bra036349.1-P	Field mustard	cytosol, plastid	21.68	14.57
Bra008895.1-P	Field mustard	nucleus	34.96	12.12
Bra019511.1-P	Field mustard	cytosol	30.89	11.91
Bra006504.1-P	Field mustard	cytosol	34.96	11.7
Bra023740.1-P	Field mustard	cytosol	33.6	11.63
Bra023374.1-P	Field mustard	nucleus	34.69	11.51
Bra002235.1-P	Field mustard	nucleus	34.15	11.31
Bra015708.1-P	Field mustard	cytosol	31.44	10.8
Bra003698.1-P	Field mustard	mitochondrion	30.89	10.59
Bra038181.1-P	Field mustard	cytosol	28.73	10.58
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	23.31	10.46
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	32.52	10.36
Bra016214.1-P	Field mustard	cytosol	29.0	10.19
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	32.52	9.45

Protein Annotations

EnsemblPlants:Bra016304.1	EnsemblPlants:Bra016304.1-P	EnsemblPlantsGene:Bra016304	Gene3D:2.130.10.30	InterPro:IPR000408	InterPro:IPR009091
InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	PANTHER:PTHR22870	PANTHER:PTHR22870:SF321	PFAM:PF00415	PFscan:PS50012
PRINTS:PR00633	ScanProsite:PS00626	SEG:seg	SUPFAM:SSF50985	UniParc:UPI00025461F4	UniProt:M4DIH7
MapMan:35.1	:	:	:	:	:

Description

AT1G27060 (E=1e-096) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA08:+:17808584..17810178

Molecular Weight (calculated)

38976.4 Da

IEP (calculated)

4.692

GRAVY (calculated)

-0.238

Length

369 amino acids

Sequence
(BLAST)

001: MSELNEAPSP ADEEEVWSWG AGTDGQLGTS KLQDEHLPQL LSLTSLPSIS MLACGGAHVI ALTSGGKVFT WGRGNSGQLG HGDNLNTSLP KLLSFFDDDY
101: FISQASAGWS HSAFVSDSGS LFTCGNGSFG QLGLGDNISL TSPAKVSYFV DKSVKMVACE NQVCGFGSGK RGQLGVSSER TKSVNLPCAV SGLEDVEVVR
201: IAANGDHSAA LSANGELFTW GRGFCGSPDV QTPQCLPSYE SFRDVALGWN HALLLTVDGK VFKLGNTLDK QSEKQQLQEG SSETLLEKVH GFDGVKVVQI
301: AAGAEHSAAV TESGEVQTWG WGEHGQLGLG DTNDQTNPQL VSLGSGDLQT KETKVYCGSG FTYVVRRKQ

Best Arabidopsis Sequence Match ( AT1G27060.1 )
(BLAST)

001: MAEHGETQAD EEEEEQVWSW GAGTDGQLGT TKLQDELLPQ LLSLTSLPSI SMLACGGAHV IALTSGGKVF TWGRGSSGQL GHGDILNITL PKLVSFFDDS
101: VITQAAAGWS HSGFVSDSGC IFTCGNGSFG QLGHGDTLSL STPAKVSHFN NDSVKMVACG MRHSLVLFAG NQVCGFGSGK RGQLGFSSDR IKSVNLPCVV
201: SGLKDVEVVR ISANGDHSAA ISADGQFFSW GRGFCGGPDV HAPQSLPSPL SFREVAVGWN HALLLTVDGE VFKLGSTLNK QPEKQQLQID SSEALFEKVP
301: DFDGVKVMQI AAGAEHSAAV TENGEVKTWG WGEHGQLGLG NTNDQTSPEL VSLGSIDLRT KEIKVYCGSG FTYAVKRKQE LSPTSS

Arabidopsis Description

At1g27060 [Source:UniProtKB/TrEMBL;Acc:A2RVN2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.