Factsheet for Bra023740.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66504	Canola	cytosol	77.02	99.52
AT3G23270.2	Thale cress	cytosol	86.21	87.19
Bra014931.1-P	Field mustard	endoplasmic reticulum, extracellular, plasma membrane	87.62	73.54
VIT_05s0049g01140.t01	Wine grape	cytosol	64.26	64.56
PGSC0003DMT400034994	Potato	cytosol	59.01	60.77
Solyc03g005590.1.1	Tomato	cytosol, plastid	60.88	60.6
KRH00393	Soybean	cytosol	57.04	56.88
KRH40796	Soybean	cytosol	39.02	55.47
KRH69117	Soybean	cytosol	55.82	55.19
KRH31700	Soybean	cytosol	54.78	54.17
Os01t0700200-01	Rice	cytosol	51.78	52.87
TraesCS1A01G366800.1	Wheat	cytosol	51.22	52.3
TraesCS1B01G384600.1	Wheat	cytosol	51.41	52.24
TraesCS1D01G372300.1	Wheat	cytosol	51.5	52.14
HORVU1Hr1G078890.1	Barley	cytosol	51.31	52.05
EES19890	Sorghum	cytosol	49.72	51.96
Os05t0545200-00	Rice	cytosol	49.25	51.78
Zm00001d011660_P003	Maize	cytosol	50.47	50.9
Zm00001d038882_P002	Maize	cytosol	50.09	50.62
EES01332	Sorghum	cytosol	50.0	50.47
Bra016214.1-P	Field mustard	cytosol	48.69	49.43
Bra003698.1-P	Field mustard	mitochondrion	49.53	49.03
Bra015708.1-P	Field mustard	cytosol	49.34	48.98
Bra008895.1-P	Field mustard	nucleus	43.81	43.89
KRH65503	Soybean	cytosol, mitochondrion, nucleus	42.59	43.4
Bra006504.1-P	Field mustard	cytosol	43.43	41.98
Bra023374.1-P	Field mustard	nucleus	43.53	41.73
Bra002235.1-P	Field mustard	nucleus	41.93	40.13
Bra019511.1-P	Field mustard	cytosol	32.36	36.05
Bra038181.1-P	Field mustard	cytosol	33.4	35.53
Bra007876.1-P	Field mustard	cytosol, nucleus, plasma membrane	37.9	34.89
Bra024242.1-P	Field mustard	cytosol	13.04	33.82
Bra016304.1-P	Field mustard	cytosol	11.63	33.6
Bra029198.1-P	Field mustard	cytosol	12.85	33.25
Bra037755.1-P	Field mustard	cytosol	12.95	33.17
Bra024664.1-P	Field mustard	cytosol	10.6	31.48
Bra008654.1-P	Field mustard	cytosol	10.32	27.71
Bra021435.1-P	Field mustard	cytosol	10.04	27.3
Bra028647.1-P	Field mustard	mitochondrion	11.07	27.0
Bra027244.1-P	Field mustard	cytosol	12.01	26.12
Bra039169.1-P	Field mustard	cytosol	11.35	25.69
Bra013002.1-P	Field mustard	mitochondrion	10.51	25.28
Bra017335.1-P	Field mustard	cytosol	11.91	23.92
Bra004253.1-P	Field mustard	plastid	11.44	23.55
Bra025182.1-P	Field mustard	cytosol	11.54	23.25
Bra004074.1-P	Field mustard	cytosol, plastid	11.07	22.74
Bra036349.1-P	Field mustard	cytosol, plastid	11.26	21.86
Bra021109.1-P	Field mustard	endoplasmic reticulum, extracellular	11.63	15.09

Protein Annotations

Gene3D:2.130.10.30	Gene3D:2.30.29.30	Gene3D:3.30.40.10	MapMan:35.1	InterPro:BRX_N	EnsemblPlantsGene:Bra023740
EnsemblPlants:Bra023740.1	EnsemblPlants:Bra023740.1-P	InterPro:Brevis_radix_dom	ncoils:Coil	GO:GO:0003674	GO:GO:0005488
GO:GO:0046872	InterPro:IPR000408	InterPro:IPR001849	InterPro:IPR009091	InterPro:IPR011993	InterPro:IPR013083
InterPro:IPR013591	InterPro:IPR017455	UniProt:M4E4N7	PFAM:PF00415	PFAM:PF01363	PFAM:PF08381
PFAM:PF13713	PFAM:PF16457	InterPro:PH-like_dom_sf	InterPro:PH_domain	PRINTS:PR00633	PFscan:PS50003
PFscan:PS50012	PFscan:PS50178	PFscan:PS51514	PANTHER:PTHR22870	PANTHER:PTHR22870:SF87	InterPro:RCC1/BLIP-II
InterPro:Reg_chr_condens	SMART:SM00064	SUPFAM:SSF50729	SUPFAM:SSF50985	SUPFAM:SSF57903	UniParc:UPI0002543D92
InterPro:Znf_FYVE	InterPro:Znf_FYVE-rel	InterPro:Znf_FYVE_PHD	InterPro:Znf_RING/FYVE/PHD	SEG:seg	:

Description

AT3G23270 (E=0.0) | regulator of chromosome condensation (RCC1) family protein

Coordinates

chrA01:-:19499712..19503751

Molecular Weight (calculated)

116706.0 Da

IEP (calculated)

8.348

GRAVY (calculated)

-0.538

Length

1066 amino acids

Sequence
(BLAST)

0001: MADPASYVYH ERDIDQALII LKKGTQLVKY SRKGKPKFRA FRLSPDEKTL IWFSHGEEKG LKLSEVSRIV PGQRTAVFKR FLRPEKDHLS FSLLYNNKER
0101: SLDLICKDKA ETEVWFAALK YIIERSRNRR ARSEIPEIHD SDNFSTGRQS IDIVSNNIPR GRTSIDLGYE RGNMLRPSTD GFRISVSSTP SCSSGGSGPD
0201: DIESLGDVYV WGEVWSEGIL PDGTVSKETV KTDVLTPRPL ESNVVLDVHQ IVCGVRHVAL VTRQGEVFTW GGEAGGRLGH GIQVDICRPK LVEFLALTNI
0301: DFVACGEYHT CVVSTSGDLF SWGDGIHNVG LLGHGSDISH WIPKRVSGPL EGLQVLSVAC GTWHSALATA NGKLFTFGDG AFGVLGHGDR ESVSNPKEVQ
0401: SLNGLKTVKV ACSIWHTAAI VEVMGQTGTS MSSRKLFTWG DGDKNRLGHG NKETYLLPTC VSSLIDYNFH QIACGHTFTV ALTTSGHVFT MGGSSHGQLG
0501: NSISDGKVPC LVQDRLVGEF VEEIACGDHH VAVLTSRSEV FTWGKGANGR LGHGDTEDRR TPTLVEALKD RHVKSLSCGS NFTSSICIHK WVSGADQSIC
0601: SGCRQAFGFT RKRHNCYNCG LVHCHACSSK KALKAALAPT PGKPHRVCDA CYNKLKAAET GYITNANRNN VATPGRSSID GSVRIDRETT RSSKILLSGN
0701: TKSVKTSRPG FRPNSSNVRD SQVPSLQQLK DIAFPSLLKP IAPAAVPQRL LVGPMSSPPP TRSSSPLPGR SSSPYARRSS PPRTSGFSRS VIDSLKKTNE
0801: VMNQEMTKLQ SQVKNLKEQC NNQRTEVHKF QEAAKEAFEL AAKQSSKHKA ATEALKSIAE QLKGLKDKLP PEVSESEAFE SINSQAEAYL NKNEVSEKSI
0901: LTTSILDQQE TSPSGNTQDQ KVDEQVSSNS SISETSNSSK PVPTESSSSS SRTGGKESKE QYEPGVYVTF VVDMNGNKIF RRVRFSKKRF DEHQAEEWWT
1001: KNKDRLLKWY SPNSSSSSPK PTASDSPIAP PPPSESPLDP SVPEKSNDEE PEVPEKSNEE EPDSEI

Best Arabidopsis Sequence Match ( AT3G23270.2 )
(BLAST)

0001: MADPASCYIY HERDVDQALV VLKKGTQLLK YSRKGKPKFR AFRLSPDEKT LIWFSRGEEK GLKLFEVSRI VPGQRTAVFK RFLRPEKDHL SFSLLYNNRE
0101: RSLDLICKDK AETEVWFAAL KFLIEKSRNR RARSEIPEIH DSDTFSVGRQ SIDFVPSNIP RGRTSIDLGY QNNSDVGYER GNMLRPSTDG FRISVSSTPS
0201: CSSGGSGPDD IESLGDVYVW GEVWTEGILP DGTASNETVK TDVLTPRPLE SNVVLDVHQI VCGVRHVALV TRQGEVFTWG EEVGGRLGHG IQVDISRPKL
0301: VEFLALTNID FVACGEYHTC VVSTSGDLFS WGDGIHNVGL LGHGSDISHW IPKRVSGPLE GLQVLSVACG TWHSALATAN GKLFTFGDGA FGVLGHGNRE
0401: SVSYPKEVQS LNGLKTVKVA CSIWHTAAIV EVMGQTATSM SSRKLFTWGD GDKNRLGHGN KETYLLPTCV SSLIDYNFHK IACGHTFTVA LTTSGHVFTM
0501: GGTAHGQLGN SISDGKLPCL VQDRLVGEFV EEIACGAHHV AVLTSRSEVF TWGKGANGRL GHGDTEDKRT PTLVEALRDR HVKSLSCGSN FTSSICIHKW
0601: VSGADQSICS GCRQAFGFTR KRHNCYNCGL VHCHACSSKK ALKAALAPTP GKPHRVCDAC YSKLKAAESG YSSNVNRNVA TPGRSIDGSV RTDRETTRSS
0701: KVLLSANKNS VMSSSRPGFT PESSNARASQ VPSLQQLKDI AFPSSLSAIQ NAFKPVVAPT TTPPRTLVIG PSSPSPPPPP RSSSPYARRP SPPRTSGFSR
0801: SVIDSLRKTN EVMNQEMTKL HSQVKNLKQR CNNQGTEIER FQKAAKDASE LAARQSSKHK AATEALKSVA EQLKELKEKL PPEVSESEAF ESINSQAEAY
0901: LNANKVSETS PLTTSGQEQE TYQKTEEQVP SNSSITETSS SSRAPSTEAS SSRISGKESK EQFEPGVYVT YEVDMNGNKI FRRVRFSKKR FDEHQAEDWW
1001: TKNKDRLLKC YSSNSSSSSS SSNPTASDSP VAPQPPSDPS VPEQSNEKEP DSET

Arabidopsis Description

Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LTP1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.