Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS1A01G240600.2 | Wheat | cytosol | 99.27 | 99.09 |
| TraesCS1D01G240700.1 | Wheat | cytosol | 98.9 | 99.09 |
| HORVU1Hr1G056870.2 | Barley | cytosol, endoplasmic reticulum, nucleus | 98.17 | 95.56 |
| HORVU0Hr1G028990.2 | Barley | cytosol | 32.88 | 91.37 |
| Os05t0384800-01 | Rice | cytosol | 90.41 | 91.16 |
| TraesCS3B01G543500.1 | Wheat | cytosol | 82.37 | 82.83 |
| GSMUA_Achr5P08220_001 | Banana | cytosol | 76.62 | 76.27 |
| GSMUA_Achr8P00080_001 | Banana | endoplasmic reticulum | 63.56 | 74.44 |
| KRH14571 | Soybean | nucleus | 74.98 | 74.16 |
| KRH73555 | Soybean | nucleus | 74.98 | 74.1 |
| VIT_06s0009g03550.t01 | Wine grape | nucleus | 74.89 | 74.07 |
| KRG99075 | Soybean | nucleus | 74.06 | 73.33 |
| AT5G12350.1 | Thale cress | nucleus | 71.51 | 72.84 |
| Solyc11g065120.1.1 | Tomato | cytosol | 74.79 | 72.54 |
| KRH45937 | Soybean | nucleus | 73.33 | 72.41 |
| CDX85690 | Canola | nucleus | 70.68 | 72.34 |
| CDX91165 | Canola | nucleus | 70.59 | 72.04 |
| Bra008895.1-P | Field mustard | nucleus | 69.95 | 71.99 |
| CDX69686 | Canola | nucleus | 70.14 | 71.78 |
| Solyc12g099740.1.1 | Tomato | nucleus | 67.12 | 71.71 |
| CDX97187 | Canola | nucleus | 69.04 | 71.46 |
| VIT_13s0067g03380.t01 | Wine grape | endoplasmic reticulum, extracellular | 71.51 | 71.31 |
| Bra006504.1-P | Field mustard | cytosol | 71.78 | 71.26 |
| AT5G19420.2 | Thale cress | mitochondrion | 72.6 | 69.8 |
| Bra023374.1-P | Field mustard | nucleus | 70.68 | 69.6 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 71.96 | 69.43 |
| CDX92532 | Canola | nucleus | 70.59 | 69.39 |
| CDX70876 | Canola | cytosol | 70.41 | 69.15 |
| CDY13998 | Canola | nucleus | 70.05 | 68.73 |
| Bra002235.1-P | Field mustard | nucleus | 69.04 | 67.86 |
| TraesCS7B01G090600.1 | Wheat | cytosol | 49.13 | 52.75 |
| TraesCS1B01G024400.1 | Wheat | cytosol, mitochondrion, nucleus | 39.63 | 47.85 |
| TraesCS3B01G581600.2 | Wheat | cytosol | 38.17 | 45.83 |
| TraesCS2B01G609200.1 | Wheat | cytosol | 43.65 | 44.67 |
| TraesCS1B01G384600.1 | Wheat | cytosol | 41.55 | 43.37 |
| TraesCS2B01G478900.1 | Wheat | cytosol, nucleus, peroxisome | 36.99 | 39.28 |
| TraesCS6B01G288400.1 | Wheat | cytosol | 35.43 | 36.36 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 13.33 | 36.05 |
| TraesCS2B01G323100.1 | Wheat | unclear | 14.34 | 35.52 |
| TraesCS5B01G366300.1 | Wheat | mitochondrion | 11.87 | 29.68 |
| TraesCS7B01G200200.1 | Wheat | cytosol | 10.41 | 29.31 |
| TraesCS2B01G254900.2 | Wheat | cytosol | 12.42 | 28.1 |
| TraesCS3B01G347100.2 | Wheat | cytosol | 9.86 | 26.54 |
| TraesCS5B01G170800.1 | Wheat | cytosol | 10.87 | 24.79 |
| TraesCS2B01G360200.1 | Wheat | cytosol | 12.05 | 24.26 |
Protein Annotations
| Gene3D:2.130.10.30 | Gene3D:2.30.29.30 | Gene3D:3.30.40.10 | MapMan:35.1 | InterPro:BRX_N | InterPro:Brevis_radix_dom |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0046872 | InterPro:IPR000408 | InterPro:IPR009091 |
| InterPro:IPR011993 | InterPro:IPR013083 | InterPro:IPR013591 | InterPro:IPR017455 | PFAM:PF00415 | PFAM:PF01363 |
| PFAM:PF08381 | PFAM:PF13713 | PFAM:PF16627 | InterPro:PH-like_dom_sf | PRINTS:PR00633 | ScanProsite:PS00626 |
| PFscan:PS50012 | PFscan:PS50178 | PFscan:PS51514 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF212 | InterPro:RCC1/BLIP-II |
| InterPro:Reg_chr_condens | SMART:SM00064 | SUPFAM:SSF50729 | SUPFAM:SSF50985 | SUPFAM:SSF57903 | EnsemblPlantsGene:TraesCS1B01G252700 |
| EnsemblPlants:TraesCS1B01G252700.2 | InterPro:Znf_FYVE | InterPro:Znf_FYVE-rel | InterPro:Znf_FYVE_PHD | InterPro:Znf_RING/FYVE/PHD | TIGR:cd00065 |
| TIGR:cd13365 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr1B:-:445430454..445438517
Molecular Weight (calculated)
118362.0 Da
IEP (calculated)
8.955
GRAVY (calculated)
-0.464
Length
1095 amino acids
Sequence
(BLAST)
(BLAST)
0001: MMSDASSDLG GGRAGPVERD IEQAITALKK GAYLLKYGRR GKPKFCPFRL SNDESILIWF SGKEEKQLRL SHVSRIIPGQ RTAIFQRYPR PEKECQSFSL
0101: ISHDRSLDII CKDKDEAEVW FAGLKTLISR SHQRKWRTES RSDMLSSGTT SPRTYTRRSS PLSSPFSSND SVHKDGSENY RLRSPYGSPP KVGLDKAFSD
0201: IVSYAAPPRP FFPSDSNVGS VHSVSSGHSD NTNGNSRGIP MDAFRVSLSS AVSSSSHGSG HDDGDALGDV FIWGEGTGEG ILGGGNSRVG SSSGAKMDCL
0301: LPKPLEFAGR LDVQNISCGG RHATLVTKQG EVYSWGEESG GRLGHGVDCD VPQPKLIDAL AHMNIELVAC GEYHTCAVTL SGDLYTWGNG TFNFGLSGHG
0401: NEVSHWMPKR LNGPLEGIHV SSISCGPWHT AVVTSAGQLF TFGDGSFGVL GHGDRQSISV PREVESLKGL RTVRAACGVW HTAAVVEVMV GNSSSSNCSS
0501: GKIFTWGDGD KGRLGHGDKE TRLVPTCVAS LVEPNFCQVA CGHCFTVALT TSGHVYTMGS SVYGQLGNPQ ADGMVPARVE GKLHKNFVEE ISCGAYHVAV
0601: LTSRTEVYTW GKGANGRLGH GDADDRNSPT LVEALKDKQV RSVVCGINFT AAICIHKWVS GVDQSMCSGC RLPFNLRRKR HNCYNCALVF CHSCSSKKSL
0701: KASLAPNPNK PYRVCDSCYG KLNEGPETDR YSSAKRGVIL QGFNDSINDD LETRSNVQLS RLSSMESFKN MDSRYSKKNK KFEFNSSRVS PIPNGSSHWS
0801: GLNISKSFGS SKKFFSASVP GSRIASRATS PVSRRTSPPR STTPTPTLGG LTSPRVVVDG AKPIKDSVSQ EVIHLRSQVE NLTRKSHLLE VELERTTKQL
0901: KEAISIAGEE TAKCKAAKEV IKSLTAQLKG MAEKLPEGAG AGAGAGAGAV KHSRLLPLSG VPVNDISMAT ENLGSPRNSG EPYLNGSNGL IVSNGPSSVR
1001: NKTHLEVGKN GTRQPDSDSK PESEWVEQDE PGVYITLTAL PGGARDLRRV RFSRKRFSET QAEQWWQENR ARVYELYNVR VVDKSVASID SDVPH
0101: ISHDRSLDII CKDKDEAEVW FAGLKTLISR SHQRKWRTES RSDMLSSGTT SPRTYTRRSS PLSSPFSSND SVHKDGSENY RLRSPYGSPP KVGLDKAFSD
0201: IVSYAAPPRP FFPSDSNVGS VHSVSSGHSD NTNGNSRGIP MDAFRVSLSS AVSSSSHGSG HDDGDALGDV FIWGEGTGEG ILGGGNSRVG SSSGAKMDCL
0301: LPKPLEFAGR LDVQNISCGG RHATLVTKQG EVYSWGEESG GRLGHGVDCD VPQPKLIDAL AHMNIELVAC GEYHTCAVTL SGDLYTWGNG TFNFGLSGHG
0401: NEVSHWMPKR LNGPLEGIHV SSISCGPWHT AVVTSAGQLF TFGDGSFGVL GHGDRQSISV PREVESLKGL RTVRAACGVW HTAAVVEVMV GNSSSSNCSS
0501: GKIFTWGDGD KGRLGHGDKE TRLVPTCVAS LVEPNFCQVA CGHCFTVALT TSGHVYTMGS SVYGQLGNPQ ADGMVPARVE GKLHKNFVEE ISCGAYHVAV
0601: LTSRTEVYTW GKGANGRLGH GDADDRNSPT LVEALKDKQV RSVVCGINFT AAICIHKWVS GVDQSMCSGC RLPFNLRRKR HNCYNCALVF CHSCSSKKSL
0701: KASLAPNPNK PYRVCDSCYG KLNEGPETDR YSSAKRGVIL QGFNDSINDD LETRSNVQLS RLSSMESFKN MDSRYSKKNK KFEFNSSRVS PIPNGSSHWS
0801: GLNISKSFGS SKKFFSASVP GSRIASRATS PVSRRTSPPR STTPTPTLGG LTSPRVVVDG AKPIKDSVSQ EVIHLRSQVE NLTRKSHLLE VELERTTKQL
0901: KEAISIAGEE TAKCKAAKEV IKSLTAQLKG MAEKLPEGAG AGAGAGAGAV KHSRLLPLSG VPVNDISMAT ENLGSPRNSG EPYLNGSNGL IVSNGPSSVR
1001: NKTHLEVGKN GTRQPDSDSK PESEWVEQDE PGVYITLTAL PGGARDLRRV RFSRKRFSET QAEQWWQENR ARVYELYNVR VVDKSVASID SDVPH
0001: MSRNGRMTPS DLSRAGPVTR DIEQAITALK KGAYLLKYGR RGKPKFCPFR LSNDESVLIW FSGKEEKHLK LSHVSRIISG QRTPIFQRYP RPEKEYQSFS
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH
0101: LIYDERSLDL ICKDKDEAEV WFSGLKALIS RCHQRKWRTE SRSDGTPSEA NSPRTYTRRS SPLHSPFSSN ESFQKEGSNH LRLHSPYESP PKNGVDKAFS
0201: DMSLYAVPPK GFFPPGSATM SVHSLSSGGS DTLHGHMKGM GMDAFRVSLS SAISSSSHGS GHDDGDTLGD VFMWGEGIGE GVLGGGNHRV GSSLEIKMDS
0301: LLPKALESTI VLDVQNIACG GQHAVLVTKQ GESFSWGEES EGRLGHGVDS NVQHPKLIDA LNTTNIELVA CGEYHSCAVT LSGDLYTWGK GDFGILGHGN
0401: EVSHWVPKRV NFLMEGIHVS SIACGPYHTA VVTSAGQLFT FGDGTFGVLG HGDRKSVFIP REVDSLKGLR TVRAACGVWH TAAVVEVMVG SSSSSNCSSG
0501: KLFTWGDGDK SRLGHGDKEP KLVPTCVAAL VEPNFCQVAC GHSLTVALTT SGHVYTMGSP VYGQLGNPHA DGKVPTRVDG KLHKSFVEEI ACGAYHVAVL
0601: TSRTEVYTWG KGSNGRLGHG DADDRNSPTL VESLKDKQVK SIACGSNFTA AVCLHKWASG MDQSMCSGCR QPFNFKRKRH NCYNCGLVFC HSCSNKKSLK
0701: ACMAPNPNKP YRVCDRCFNK LKKAMETDPS SHSSLSRRES VNQGSDAIDR DEKLDTRSDG QLARFSLLEP MRQVDSRSKK NKKYEFNSSR VSPIPSGGSH
0801: RGSLNITKSF NPTFGSSKKF FSASVPGSRI ASRATSPISR RPSPPRSTTP TPTLSGLTTP KIVVDDTKRS NDNLSQEVVM LRSQVENLTR KAQLQEVELE
0901: RTTKQLKEAL AIASEESARC KAAKEVIKSL TAQLKDMAER LPVGSARTVK SPSLNSFGSS PDYAAPSSNT LNRPNSRETD SDSLTTVPMF SNGTSTPVFD
1001: SGSYRQQANH AAEAINRIST RSKESEPRNE NEWVEQDEPG VYITLTALAG GARDLKRVRF SRKRFSEKQA EEWWAENRGR VYEQYNVRIV VDKSSVGVGS
1101: EDLGH
Arabidopsis Description
Regulator of chromosome condensation (RCC1) family with FYVE zinc finger domain-containing protein [Source:UniProtKB/TrEMBL;Acc:F4K148]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.