Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63860.1 | CDY12145 | AT2G32950.1 | 19165148 |
| AT5G63860.1 | CDY52540 | AT2G32950.1 | 19165148 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024242.1-P | Field mustard | cytosol | 94.86 | 98.78 |
| CDX84451 | Canola | cytosol | 97.2 | 93.27 |
| AT5G63860.1 | Thale cress | cytosol | 91.82 | 89.32 |
| CDY31347 | Canola | cytosol | 89.49 | 87.84 |
| CDX81201 | Canola | cytosol | 89.72 | 87.27 |
| CDY60046 | Canola | cytosol | 90.65 | 86.61 |
| CDY39843 | Canola | cytosol | 79.44 | 84.16 |
| VIT_07s0031g02560.t01 | Wine grape | cytosol | 79.67 | 76.63 |
| Solyc05g018620.2.1 | Tomato | cytosol | 52.8 | 73.62 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 75.0 | 73.12 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 75.23 | 71.71 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 73.6 | 71.43 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 73.36 | 70.88 |
| TraesCS2A01G306400.3 | Wheat | cytosol | 73.36 | 70.88 |
| EES10837 | Sorghum | cytosol | 73.36 | 70.88 |
| TraesCS2B01G323100.1 | Wheat | unclear | 73.13 | 70.81 |
| Os04t0435700-01 | Rice | plasma membrane | 74.77 | 70.64 |
| Zm00001d003632_P003 | Maize | extracellular | 72.9 | 70.43 |
| KRH59606 | Soybean | cytosol | 71.03 | 69.57 |
| Os02t0554100-01 | Rice | cytosol, plasma membrane | 72.43 | 68.43 |
| KRH53944 | Soybean | plastid | 73.83 | 66.67 |
| KRH63996 | Soybean | nucleus | 74.3 | 65.98 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 61.92 | 65.43 |
| TraesCS6D01G142500.1 | Wheat | golgi | 66.82 | 65.0 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 66.82 | 64.71 |
| KRH40960 | Soybean | cytosol | 49.77 | 63.02 |
| TraesCS6A01G153100.1 | Wheat | golgi | 66.82 | 60.85 |
| CDY34733 | Canola | cytosol | 21.96 | 28.06 |
| CDY69131 | Canola | cytosol | 20.33 | 27.1 |
| CDY46423 | Canola | cytosol | 23.6 | 26.65 |
| CDY16215 | Canola | cytosol | 23.13 | 25.65 |
| CDX69479 | Canola | cytosol | 23.6 | 25.44 |
| CDY26488 | Canola | cytosol | 23.6 | 25.38 |
| CDY44785 | Canola | mitochondrion | 25.47 | 25.17 |
| CDY40735 | Canola | mitochondrion | 25.47 | 24.94 |
| CDY56827 | Canola | cytosol | 25.93 | 23.27 |
| CDX97668 | Canola | cytosol | 25.93 | 23.27 |
| CDY02190 | Canola | mitochondrion | 23.13 | 22.35 |
| CDY51633 | Canola | mitochondrion | 23.13 | 22.3 |
| CDY04192 | Canola | cytosol | 25.23 | 21.95 |
| CDY39172 | Canola | cytosol | 25.0 | 21.75 |
| CDY43240 | Canola | cytosol | 23.36 | 21.19 |
| CDY57523 | Canola | cytosol | 23.13 | 21.02 |
| CDY01845 | Canola | plastid | 24.53 | 20.31 |
| CDX96062 | Canola | plastid | 24.3 | 20.08 |
| CDY13609 | Canola | cytosol | 24.07 | 19.47 |
| CDY28863 | Canola | cytosol | 23.6 | 19.42 |
| CDX83586 | Canola | cytosol, plastid | 23.83 | 19.28 |
| CDY56518 | Canola | cytosol, plastid | 23.13 | 19.04 |
| CDX99731 | Canola | cytosol, plastid | 23.6 | 18.88 |
| CDY40988 | Canola | cytosol, plastid | 23.36 | 18.21 |
| CDY66504 | Canola | cytosol | 32.01 | 16.61 |
| CDY47138 | Canola | cytosol | 35.98 | 14.71 |
| CDY11586 | Canola | cytosol | 35.28 | 14.34 |
| CDY48550 | Canola | cytosol | 32.48 | 14.18 |
| CDY14709 | Canola | nucleus | 22.9 | 14.18 |
| CDY21795 | Canola | cytosol | 31.54 | 14.11 |
| CDX97187 | Canola | nucleus | 34.58 | 13.99 |
| CDX69686 | Canola | nucleus | 34.81 | 13.93 |
| CDX85690 | Canola | nucleus | 34.81 | 13.93 |
| CDX77871 | Canola | cytosol | 30.84 | 13.91 |
| CDY31624 | Canola | cytosol | 31.78 | 13.84 |
| CDX91165 | Canola | nucleus | 34.58 | 13.79 |
| CDY20113 | Canola | endoplasmic reticulum, extracellular | 26.4 | 13.7 |
| CDX87986 | Canola | cytosol | 6.54 | 13.59 |
| CDY70949 | Canola | cytosol | 11.21 | 13.56 |
| CDX87989 | Canola | cytosol | 31.54 | 13.47 |
| CDX92532 | Canola | nucleus | 35.05 | 13.46 |
| CDY21840 | Canola | endoplasmic reticulum, extracellular | 25.93 | 13.44 |
| CDX87557 | Canola | cytosol | 33.18 | 13.23 |
| CDX85076 | Canola | cytosol | 32.01 | 13.2 |
| CDX88324 | Canola | cytosol | 32.71 | 13.2 |
| CDY13998 | Canola | nucleus | 34.35 | 13.17 |
| CDY12764 | Canola | cytosol | 32.01 | 13.07 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 34.58 | 13.04 |
| CDX70876 | Canola | cytosol | 32.48 | 12.47 |
| CDY44086 | Canola | plasma membrane, vacuole | 30.61 | 12.45 |
| CDY28580 | Canola | plasma membrane | 30.37 | 12.45 |
| CDY49416 | Canola | cytosol | 32.24 | 12.33 |
| CDX77534 | Canola | cytosol | 32.01 | 12.33 |
| CDX68076 | Canola | cytosol | 16.12 | 8.31 |
Protein Annotations
| Gene3D:2.130.10.30 | MapMan:26.1.3.1 | UniProt:A0A078I0Z6 | EnsemblPlants:CDY43762 | ProteinID:CDY43762 | ProteinID:CDY43762.1 |
| GO:GO:0003674 | GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0007154 | GO:GO:0007165 |
| GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009881 | GO:GO:0009987 | GO:GO:0010224 | GO:GO:0038023 |
| GO:GO:0042803 | EnsemblPlantsGene:GSBRNA2T00077259001 | InterPro:IPR000408 | InterPro:IPR009091 | PFAM:PF00415 | PRINTS:PR00633 |
| ScanProsite:PS00626 | PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF317 | InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens |
| SUPFAM:SSF50985 | UniParc:UPI0004EE99F0 | InterPro:UVR8 | : | : | : |
Description
BnaA06g22980DBnaA06g22980D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I0Z6]
Coordinates
chrLK032568:-:19662..23160
Molecular Weight (calculated)
45727.2 Da
IEP (calculated)
4.937
GRAVY (calculated)
-0.377
Length
428 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEEMVAGD VTAPPPKVLI ISAGASHSVA LLSGDIVCSW GRGEDGQLGH GDAEDRPSPT QLSALDDHQI VSVTCGADHT VAYSESRKEV YSWGWGDFGR
101: LGHGNSSDLF TPLPIKALHG IRIQQIACGD SHCLAVTMDG EVQSWGRNQN GQLGLGDTED SLVPKKIQAF EGIRIKMVAA GAEHTAAVTE DGDLYGWGWG
201: RYGNLGLGDR NDRLVPERVT SASGEKMSMV ACGWRHTIAV SYSGALYTYG WSKYGQLGHG DLEDHLVPHK LEALSNSVIS QISGGWRHTM ALTSDGKLYG
301: WGWNKFGQVG VGDNLDQCSP LQKVVQVSCG WRHTLAVTEG NNVFAWGRGT NGQLGIGECL DRNYPQIIEA LSVDGESGQH IESSNFDPSA GKSWVSPAER
401: YAVVPDEKTG QTDGSSKGNG SDMSVPTN
101: LGHGNSSDLF TPLPIKALHG IRIQQIACGD SHCLAVTMDG EVQSWGRNQN GQLGLGDTED SLVPKKIQAF EGIRIKMVAA GAEHTAAVTE DGDLYGWGWG
201: RYGNLGLGDR NDRLVPERVT SASGEKMSMV ACGWRHTIAV SYSGALYTYG WSKYGQLGHG DLEDHLVPHK LEALSNSVIS QISGGWRHTM ALTSDGKLYG
301: WGWNKFGQVG VGDNLDQCSP LQKVVQVSCG WRHTLAVTEG NNVFAWGRGT NGQLGIGECL DRNYPQIIEA LSVDGESGQH IESSNFDPSA GKSWVSPAER
401: YAVVPDEKTG QTDGSSKGNG SDMSVPTN
001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
Arabidopsis Description
UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.