Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G63860.1 | CDY12145 | AT2G32950.1 | 19165148 |
| AT5G63860.1 | CDY52540 | AT2G32950.1 | 19165148 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY43762 | Canola | cytosol | 93.27 | 97.2 |
| AT5G63860.1 | Thale cress | cytosol | 88.56 | 89.77 |
| CDY31347 | Canola | cytosol | 86.32 | 88.3 |
| CDX81201 | Canola | cytosol | 87.0 | 88.18 |
| CDY60046 | Canola | cytosol | 87.22 | 86.83 |
| CDY39843 | Canola | cytosol | 76.91 | 84.9 |
| VIT_07s0031g02560.t01 | Wine grape | cytosol | 77.58 | 77.75 |
| Solyc05g018620.2.1 | Tomato | cytosol | 50.9 | 73.94 |
| GSMUA_Achr6P17690_001 | Banana | cytosol | 72.65 | 73.8 |
| GSMUA_Achr3P19000_001 | Banana | nucleus | 72.87 | 72.38 |
| HORVU2Hr1G076180.1 | Barley | cytosol, endoplasmic reticulum | 70.85 | 71.66 |
| EES10837 | Sorghum | cytosol | 71.08 | 71.56 |
| Zm00001d003632_P003 | Maize | extracellular | 70.63 | 71.11 |
| TraesCS2A01G306400.3 | Wheat | cytosol | 70.63 | 71.11 |
| TraesCS2D01G304900.2 | Wheat | cytosol | 70.63 | 71.11 |
| TraesCS2B01G323100.1 | Wheat | unclear | 70.4 | 71.04 |
| Os04t0435700-01 | Rice | plasma membrane | 71.97 | 70.86 |
| KRH59606 | Soybean | cytosol | 68.83 | 70.25 |
| Os02t0554100-01 | Rice | cytosol, plasma membrane | 70.18 | 69.09 |
| KRH53944 | Soybean | plastid | 71.75 | 67.51 |
| KRH63996 | Soybean | nucleus | 71.97 | 66.6 |
| TraesCS6B01G180900.1 | Wheat | cytosol | 60.09 | 66.17 |
| TraesCS6D01G142500.1 | Wheat | golgi | 64.8 | 65.68 |
| HORVU6Hr1G030600.2 | Barley | plasma membrane | 64.8 | 65.38 |
| KRH40960 | Soybean | cytosol | 49.1 | 64.79 |
| TraesCS6A01G153100.1 | Wheat | golgi | 64.8 | 61.49 |
| CDY34733 | Canola | cytosol | 21.08 | 28.06 |
| CDY69131 | Canola | cytosol | 19.51 | 27.1 |
| CDY46423 | Canola | cytosol | 22.65 | 26.65 |
| CDY16215 | Canola | cytosol | 22.2 | 25.65 |
| CDX69479 | Canola | cytosol | 22.65 | 25.44 |
| CDY26488 | Canola | cytosol | 22.65 | 25.38 |
| CDY44785 | Canola | mitochondrion | 24.22 | 24.94 |
| CDY40735 | Canola | mitochondrion | 24.22 | 24.71 |
| CDY56827 | Canola | cytosol | 24.89 | 23.27 |
| CDX97668 | Canola | cytosol | 24.89 | 23.27 |
| CDY04192 | Canola | cytosol | 24.44 | 22.15 |
| CDY02190 | Canola | mitochondrion | 21.97 | 22.12 |
| CDY51633 | Canola | mitochondrion | 21.97 | 22.07 |
| CDY39172 | Canola | cytosol | 24.22 | 21.95 |
| CDY43240 | Canola | cytosol | 22.65 | 21.4 |
| CDY57523 | Canola | cytosol | 22.42 | 21.23 |
| CDY01845 | Canola | plastid | 23.32 | 20.12 |
| CDX96062 | Canola | plastid | 23.32 | 20.08 |
| CDY28863 | Canola | cytosol | 22.87 | 19.62 |
| CDY13609 | Canola | cytosol | 23.09 | 19.47 |
| CDY56518 | Canola | cytosol, plastid | 22.65 | 19.42 |
| CDX83586 | Canola | cytosol, plastid | 22.87 | 19.28 |
| CDX99731 | Canola | cytosol, plastid | 22.87 | 19.07 |
| CDY40988 | Canola | cytosol, plastid | 22.65 | 18.4 |
| CDY66504 | Canola | cytosol | 31.17 | 16.85 |
| CDY47138 | Canola | cytosol | 34.98 | 14.9 |
| CDY11586 | Canola | cytosol | 34.3 | 14.53 |
| CDY21795 | Canola | cytosol | 30.94 | 14.42 |
| CDY48550 | Canola | cytosol | 31.61 | 14.39 |
| CDX77871 | Canola | cytosol | 30.27 | 14.23 |
| CDY14709 | Canola | nucleus | 21.97 | 14.18 |
| CDY31624 | Canola | cytosol | 31.17 | 14.14 |
| CDX97187 | Canola | nucleus | 33.41 | 14.08 |
| CDX87986 | Canola | cytosol | 6.5 | 14.08 |
| CDX85690 | Canola | nucleus | 33.63 | 14.02 |
| CDX69686 | Canola | nucleus | 33.41 | 13.93 |
| CDX91165 | Canola | nucleus | 33.41 | 13.89 |
| CDX87989 | Canola | cytosol | 31.17 | 13.87 |
| CDY20113 | Canola | endoplasmic reticulum, extracellular | 25.56 | 13.82 |
| CDY21840 | Canola | endoplasmic reticulum, extracellular | 25.34 | 13.68 |
| CDY70949 | Canola | cytosol | 10.76 | 13.56 |
| CDX92532 | Canola | nucleus | 33.86 | 13.55 |
| CDX85076 | Canola | cytosol | 31.39 | 13.49 |
| CDY12764 | Canola | cytosol | 31.39 | 13.36 |
| CDY13998 | Canola | nucleus | 33.41 | 13.35 |
| CDX87557 | Canola | cytosol | 32.06 | 13.33 |
| CDX88324 | Canola | cytosol | 31.61 | 13.29 |
| CDX88891 | Canola | cytosol, mitochondrion, nucleus | 33.41 | 13.13 |
| CDY28580 | Canola | plasma membrane | 30.04 | 12.84 |
| CDY44086 | Canola | plasma membrane, vacuole | 30.27 | 12.83 |
| CDX77534 | Canola | cytosol | 31.39 | 12.6 |
| CDY49416 | Canola | cytosol | 31.61 | 12.6 |
| CDX70876 | Canola | cytosol | 31.39 | 12.56 |
| CDX68076 | Canola | cytosol | 15.25 | 8.19 |
Protein Annotations
| Gene3D:2.130.10.30 | MapMan:26.1.3.1 | EnsemblPlants:CDX84451 | ProteinID:CDX84451 | ProteinID:CDX84451.1 | GO:GO:0003674 |
| GO:GO:0004871 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009881 |
| GO:GO:0010224 | GO:GO:0038023 | GO:GO:0042803 | EnsemblPlantsGene:GSBRNA2T00141658001 | InterPro:IPR000408 | InterPro:IPR009091 |
| PFAM:PF00415 | PRINTS:PR00633 | ScanProsite:PS00626 | PFscan:PS50012 | PANTHER:PTHR22870 | PANTHER:PTHR22870:SF317 |
| InterPro:RCC1/BLIP-II | InterPro:Reg_chr_condens | SUPFAM:SSF50985 | UniParc:UPI0004EDB63F | InterPro:UVR8 | : |
Description
BnaC03g50490D
Coordinates
chrLK031837:-:1230101..1233651
Molecular Weight (calculated)
47970.9 Da
IEP (calculated)
5.371
GRAVY (calculated)
-0.378
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEEMVAGD VTGPPRKVLI ISAGASHSVA LLTGDIVCSW GRGEDGQLGH GDAEDRPSPT QLSALDDHQI VSVTCGADHT VAYSESRKEV YSWGWGDFGR
101: LGHGNSSDLF TPLPIKALHG IRIKQIACGD SHCLAVTMDG EVQSWGRNQN GQLGLGDTED SLVPQKIRVF EGLRIKMVAA GAEHTAAVTE DGDLYGWGWG
201: RYGNLGLGDR NDRLVPERVT SASGEKMSMV ACGWRHTIAV SYSGALYTYG WSKYGQLGHG DLEDHLVPHK LEALSNSVIS QISGGWRHTM ALTSDGKLYG
301: WGWNKFGQVG VGDNLDQCSP LQVCLSHSFS NIHTNIFVEQ KVVQVSCGWR HTLAVTEKNN VFAWGRGTNG QLGIGESIDR NYPQIIEALS VDGESGQHIE
401: SSNFDPSSGK SWVSPAERYA VVPDEKTGQT DGSSKGNGSD MSVPTN
101: LGHGNSSDLF TPLPIKALHG IRIKQIACGD SHCLAVTMDG EVQSWGRNQN GQLGLGDTED SLVPQKIRVF EGLRIKMVAA GAEHTAAVTE DGDLYGWGWG
201: RYGNLGLGDR NDRLVPERVT SASGEKMSMV ACGWRHTIAV SYSGALYTYG WSKYGQLGHG DLEDHLVPHK LEALSNSVIS QISGGWRHTM ALTSDGKLYG
301: WGWNKFGQVG VGDNLDQCSP LQVCLSHSFS NIHTNIFVEQ KVVQVSCGWR HTLAVTEKNN VFAWGRGTNG QLGIGESIDR NYPQIIEALS VDGESGQHIE
401: SSNFDPSSGK SWVSPAERYA VVPDEKTGQT DGSSKGNGSD MSVPTN
001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI
Arabidopsis Description
UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.