Factsheet for GSMUA_Achr6P17690_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr3P20130_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G63860.1	GSMUA_Achr3P20130_001	AT2G32950.1	19165148
AT5G63860.1	GSMUA_AchrUn_...	AT2G32950.1	19165148

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr3P19000_001	Banana	nucleus	88.84	86.86
VIT_07s0031g02560.t01	Wine grape	cytosol	79.73	78.65
EES10837	Sorghum	cytosol	77.9	77.2
Bra037755.1-P	Field mustard	cytosol	72.67	76.68
HORVU2Hr1G076180.1	Barley	cytosol, endoplasmic reticulum	76.99	76.64
TraesCS2B01G323100.1	Wheat	unclear	76.99	76.47
Zm00001d003632_P003	Maize	extracellular	76.99	76.3
Os04t0435700-01	Rice	plasma membrane	78.36	75.94
Bra024242.1-P	Field mustard	cytosol	71.07	75.91
TraesCS2D01G304900.2	Wheat	cytosol	76.31	75.62
TraesCS2A01G306400.3	Wheat	cytosol	76.31	75.62
Bra029198.1-P	Field mustard	cytosol	70.84	75.49
AT5G63860.1	Thale cress	cytosol	75.63	75.45
CDX81201	Canola	cytosol	75.63	75.45
CDY43762	Canola	cytosol	73.12	75.0
CDY60046	Canola	cytosol	76.54	75.0
Solyc05g018620.2.1	Tomato	cytosol	52.16	74.59
CDY31347	Canola	cytosol	74.03	74.54
Os02t0554100-01	Rice	cytosol, plasma membrane	76.31	73.95
CDX84451	Canola	cytosol	73.8	72.65
CDY39843	Canola	cytosol	66.06	71.78
TraesCS6B01G180900.1	Wheat	cytosol	65.83	71.36
TraesCS6D01G142500.1	Wheat	golgi	71.07	70.91
HORVU6Hr1G030600.2	Barley	plasma membrane	71.07	70.59
KRH59606	Soybean	cytosol	68.34	68.65
TraesCS6A01G153100.1	Wheat	golgi	71.53	66.81
KRH53944	Soybean	plastid	70.84	65.61
KRH63996	Soybean	nucleus	70.84	64.52
KRH40960	Soybean	cytosol	48.06	62.43
GSMUA_Achr9P15560_001	Banana	cytosol	23.69	27.96
GSMUA_Achr10P...	Banana	mitochondrion	25.97	27.14
GSMUA_Achr1P00100_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	29.84	26.63
GSMUA_Achr5P12060_001	Banana	mitochondrion	26.65	25.89
GSMUA_Achr2P10610_001	Banana	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	28.93	25.81
GSMUA_Achr6P29750_001	Banana	cytosol	23.23	25.69
GSMUA_Achr8P06920_001	Banana	cytosol	18.68	25.08
GSMUA_Achr10P...	Banana	cytosol	24.15	21.95
GSMUA_Achr9P02110_001	Banana	plastid	23.92	19.52
GSMUA_AchrUn_...	Banana	cytosol, plastid	23.69	19.37
GSMUA_AchrUn_...	Banana	cytosol	21.64	17.82
GSMUA_Achr8P00080_001	Banana	endoplasmic reticulum	33.71	15.83
GSMUA_Achr5P08220_001	Banana	cytosol	37.59	15.0
GSMUA_Achr1P02140_001	Banana	cytosol	29.84	14.67
GSMUA_Achr4P00510_001	Banana	cytosol	30.75	14.05
GSMUA_Achr8P07850_001	Banana	cytosol	35.31	14.03
GSMUA_Achr5P11650_001	Banana	cytosol	29.39	13.3
GSMUA_AchrUn_...	Banana	nucleus	34.4	13.1
GSMUA_Achr2P20470_001	Banana	endoplasmic reticulum, plasma membrane	28.47	12.66
GSMUA_Achr6P13030_001	Banana	endoplasmic reticulum	26.65	11.95
GSMUA_Achr7P20980_001	Banana	cytosol	31.66	9.57

Protein Annotations

Gene3D:2.130.10.30	MapMan:26.1.3.1	GO:GO:0003674	GO:GO:0004871	GO:GO:0005488	GO:GO:0005515
GO:GO:0007154	GO:GO:0007165	GO:GO:0008150	GO:GO:0009628	GO:GO:0009881	GO:GO:0009987
GO:GO:0010224	GO:GO:0038023	GO:GO:0042803	EnsemblPlantsGene:GSMUA_Achr6G17690_001	EnsemblPlants:GSMUA_Achr6P17690_001	EnsemblPlants:GSMUA_Achr6T17690_001
InterPro:IPR000408	InterPro:IPR009091	UniProt:M0T7W7	PFAM:PF00415	PRINTS:PR00633	ScanProsite:PS00626
PFscan:PS50012	PANTHER:PTHR22870	PANTHER:PTHR22870:SF317	InterPro:RCC1/BLIP-II	InterPro:Reg_chr_condens	SUPFAM:SSF50985
UniParc:UPI0002949613	InterPro:UVR8	:	:	:	:

Description

Putative Probable E3 ubiquitin-protein ligase HERC4 [Source:GMGC_GENE;Acc:GSMUA_Achr6G17690_001]

Coordinates

chr6:-:11892235..11901293

Molecular Weight (calculated)

47215.3 Da

IEP (calculated)

5.872

GRAVY (calculated)

-0.387

Length

439 amino acids

Sequence
(BLAST)

001: MAEEGSGADA AAPDREVLLI SAGASHSVAL LSGSDICSWG RGEDGQLGHG DAEDRLLPTL LCALDSRSIV SVTCGADHTT AYSESDEQVY SWGWGDFGRL
101: GHGNSSDVFT PQPIKALQRL KIKQIACGDS HCLAVTMNGE IVCWGRNQNG QLGLGTTDDS LVPQKIQAFQ GICVKMIAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLADRN DRLTPEKVTS IKGENMVLVA CGWRHTIAVS SSGNLYTYGW SKYGQLGHGD FEDHLSPHLL EALKDSCISQ ISGGWRHTMA LTSDGRLYGW
301: GWNKFGQLGV GDNDDHCSPV QVKLPEEQKV KQISCGWRHT LALTERGNVF SWGRGTSGQL GHGDILDRNT PKMIEVISKD GLGCKQIESS KVAPSSGKIW
401: VSPSERYAIV PDETAAKPST RGNGNDTSVP ETDVKRMRV

Best Arabidopsis Sequence Match ( AT5G63860.1 )
(BLAST)

001: MAEDMAADEV TAPPRKVLII SAGASHSVAL LSGDIVCSWG RGEDGQLGHG DAEDRPSPTQ LSALDGHQIV SVTCGADHTV AYSQSGMEVY SWGWGDFGRL
101: GHGNSSDLFT PLPIKALHGI RIKQIACGDS HCLAVTMEGE VQSWGRNQNG QLGLGDTEDS LVPQKIQAFE GIRIKMVAAG AEHTAAVTED GDLYGWGWGR
201: YGNLGLGDRT DRLVPERVTS TGGEKMSMVA CGWRHTISVS YSGALYTYGW SKYGQLGHGD LEDHLIPHKL EALSNSFISQ ISGGWRHTMA LTSDGKLYGW
301: GWNKFGQVGV GNNLDQCSPV QVRFPDDQKV VQVSCGWRHT LAVTERNNVF AWGRGTNGQL GIGESVDRNF PKIIEALSVD GASGQHIESS NIDPSSGKSW
401: VSPAERYAVV PDETGLTDGS SKGNGGDISV PQTDVKRVRI

Arabidopsis Description

UVR8Ultraviolet-B receptor UVR8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN03]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.