CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH11182
KRH21072
KRH21073
KRH25071
KRH42547
KRH43086
KRH58640
KRH59212
KRH59213

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	KRH25071	AT4G05420.1	16792691
AT5G58760.1	KRH43086	AT4G05420.1	16792691
AT5G58760.1	KRH59212	AT4G05420.1	16792691
AT5G58760.1	KRH59213	AT4G05420.1	16792691
AT5G58760.1	KRH25071	AT4G05420.1	18551167
AT5G58760.1	KRH43086	AT4G05420.1	18551167
AT5G58760.1	KRH59212	AT4G05420.1	18551167
AT5G58760.1	KRH59213	AT4G05420.1	18551167
AT5G58760.1	KRH11182	AT5G46210.1	18551167
AT5G58760.1	KRH21072	AT5G46210.1	18551167
AT5G58760.1	KRH21073	AT5G46210.1	18551167
AT5G58760.1	KRH42547	AT5G46210.1	18551167
AT5G58760.1	KRH58640	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056773	Potato	nucleus	32.2	58.62
KRH17028	Soybean	nucleus	96.21	45.28
CDY32686	Canola	nucleus	72.35	35.05
Bra020355.1-P	Field mustard	nucleus	72.35	34.92
VIT_06s0004g06550.t01	Wine grape	nucleus	73.48	34.7
CDY02834	Canola	nucleus	71.21	34.0
AT5G58760.1	Thale cress	nucleus	67.42	31.96
Solyc09g031610.2.1	Tomato	nucleus	66.29	29.81
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	60.98	29.38
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	63.26	29.3
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	63.26	29.2
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	63.64	29.17
Os01t0141700-01	Rice	nucleus	63.26	28.64
Zm00001d008597_P001	Maize	mitochondrion, nucleus	61.36	28.42
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	62.12	28.13
KRH72668	Soybean	nucleus	0.0	0.0

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	UniProt:A0A0R0KZY8	EMBL:ACUP02001226	InterPro:DDB2	EnsemblPlantsGene:GLYMA_02G2263001
GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259
GO:GO:0006281	GO:GO:0006950	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH72670	ProteinID:KRH72670	ProteinID:KRH72670.1
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI0006EDA9C2	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:41321458..41323324

Molecular Weight (calculated)

29763.1 Da

IEP (calculated)

8.885

GRAVY (calculated)

-0.693

Length

264 amino acids

Sequence
(BLAST)

001: VDIRSNNRSG DAILIHKKGK VVGIHCNPIQ PDIFLTCGND HFARIWDLRQ IEAGSSLYDL KHTRVVNSAY FSPISGTKIL TTSQDNRLRV WDSIFGNVDS
101: PSREIVHSHD FNRHLTPFKA EWDPKDPSES LAVVGRYISE NYNGAALHPI DFIDTSTGQL VAEVMDPNIT TISPVNKLHP RDDILATGSS RSLFIWKPKE
201: KSELVEEKDE QKIVVCGKAE KKRGKKNGNI SDESDDEGFM SKSKKSKSKK TEWKLSRCTT KDNR

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.