Factsheet for GSMUA_Achr11P24160_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 2
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, mitochondrion, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P22850_001
GSMUA_Achr7P01270_001
GSMUA_Achr8P07200_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	GSMUA_Achr8P07200_001	AT4G05420.1	16792691
AT5G58760.1	GSMUA_Achr8P07200_001	AT4G05420.1	18551167
AT5G58760.1	GSMUA_Achr4P22850_001	AT5G46210.1	18551167
AT5G58760.1	GSMUA_Achr7P01270_001	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	64.6	62.11
VIT_06s0004g06550.t01	Wine grape	nucleus	63.32	62.08
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	64.96	61.81
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	64.42	61.71
KRH72670	Soybean	cytosol	29.38	60.98
Os01t0141700-01	Rice	nucleus	64.05	60.21
AT5G58760.1	Thale cress	nucleus	60.58	59.6
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	63.32	59.52
KRH17028	Soybean	nucleus	60.58	59.18
CDY32686	Canola	nucleus	58.21	58.53
Bra020355.1-P	Field mustard	nucleus	58.21	58.32
CDY02834	Canola	nucleus	58.39	57.87
KRH72668	Soybean	nucleus	30.66	57.73
Solyc09g031610.2.1	Tomato	nucleus	60.58	56.56
Zm00001d008597_P001	Maize	mitochondrion, nucleus	58.03	55.79
PGSC0003DMT400056773	Potato	nucleus	12.77	48.28

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	Gene3D:4.10.60.10	InterPro:DDB2	GO:GO:0003674	GO:GO:0003676
GO:GO:0003677	GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950
GO:GO:0008150	GO:GO:0008152	GO:GO:0008270	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224
GO:GO:0080008	EnsemblPlantsGene:GSMUA_Achr11G24160_001	EnsemblPlants:GSMUA_Achr11P24160_001	EnsemblPlants:GSMUA_Achr11T24160_001	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M0RUZ6	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI0002967C51	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:

Description

Protein DAMAGED DNA-BINDING 2 [Source:GMGC_GENE;Acc:GSMUA_Achr11G24160_001]

Coordinates

chr11:+:23811939..23817746

Molecular Weight (calculated)

61429.0 Da

IEP (calculated)

8.176

GRAVY (calculated)

-0.551

Length

548 amino acids

Sequence
(BLAST)

001: MPFASSSLRP RFLRREADSD EESETSSSGG EDDLEEDFPE EAQVEEDTAD EVAPGKRKKP PPITISLKRV CKVCKQSGHE AGFRGATYID CPRKPCFLCK
101: TPGHTTMSCP HRVAMEHGVI PAPARNTKTP LDYIFMRQLK GKIPKIKPVY VIPDQVDCGL IRFHSRRVTC LEFHPTKSNI LLSGDKKGQL GIWNYDKQHE
201: RTIYGSIHSC IVNNIKFSLG NDAMAYTSSS DGTVSCTDME TGISTLLLDL NPDGWNGPAS WRMLYGMDVN TEKGVLLVAD NFGYLYLLDV RSNVKIGEPI
301: LVHKKGSKVV GLHCNPVQPD VLLSCGNDHF ARIWDARRLG TESCLASLAH GRVVNSAYFS PLTGNKILTT SQDNRIRVWD SIFGNLEYPS REIVHSHDFN
401: RHLTPFRAEW DPKDPSESLV VIGRYISENY DGVALHPIDF IDTSTGKLVA EVIDTDVTTI SPVNKLHPQD HILATGSSRT LLIWKARQED WEAKKQPEKR
501: PKQFIFRRNE KKSNGKFDSD SGGDSDYDSN GKKRKAKKCQ GKYKKLVC

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.