Factsheet for TraesCS3D01G054200.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, peroxisome, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 2
peroxisome 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1B01G473400.1
TraesCS1D01G445700.1
TraesCS3A01G210100.2
TraesCS3B01G240600.1
TraesCS5A01G425300.1
TraesCS5B01G427400.1
TraesCS5D01G433700.3
TraesCSU01G002300.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	TraesCS1B01G473400.1	AT4G05420.1	16792691
AT5G58760.1	TraesCS1D01G445700.1	AT4G05420.1	16792691
AT5G58760.1	TraesCS3A01G210100.2	AT4G05420.1	16792691
AT5G58760.1	TraesCS3B01G240600.1	AT4G05420.1	16792691
AT5G58760.1	TraesCSU01G002300.1	AT4G05420.1	16792691
AT5G58760.1	TraesCS1B01G473400.1	AT4G05420.1	18551167
AT5G58760.1	TraesCS1D01G445700.1	AT4G05420.1	18551167
AT5G58760.1	TraesCS3A01G210100.2	AT4G05420.1	18551167
AT5G58760.1	TraesCS3B01G240600.1	AT4G05420.1	18551167
AT5G58760.1	TraesCSU01G002300.1	AT4G05420.1	18551167
AT5G58760.1	TraesCS5A01G425300.1	AT5G46210.1	18551167
AT5G58760.1	TraesCS5B01G427400.1	AT5G46210.1	18551167
AT5G58760.1	TraesCS5D01G433700.3	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	98.25	97.9
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	96.67	95.66
Os01t0141700-01	Rice	nucleus	83.51	81.65
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	82.46	80.62
Zm00001d008597_P001	Maize	mitochondrion, nucleus	75.96	75.96
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	62.11	64.6
KRH72670	Soybean	cytosol	29.3	63.26
VIT_06s0004g06550.t01	Wine grape	nucleus	59.47	60.64
KRH17028	Soybean	nucleus	58.95	59.89
AT5G58760.1	Thale cress	nucleus	56.49	57.81
CDY32686	Canola	nucleus	55.26	57.8
Bra020355.1-P	Field mustard	nucleus	55.44	57.77
KRH72668	Soybean	nucleus	29.47	57.73
CDY02834	Canola	nucleus	54.91	56.6
Solyc09g031610.2.1	Tomato	nucleus	54.21	52.64
PGSC0003DMT400056773	Potato	nucleus	13.33	52.41

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	InterPro:DDB2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0080008	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS3D01G054200	EnsemblPlants:TraesCS3D01G054200.1
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg

Description

No Description!

Coordinates

chr3D:-:22280893..22285096

Molecular Weight (calculated)

62973.3 Da

IEP (calculated)

8.219

GRAVY (calculated)

-0.636

Length

570 amino acids

Sequence
(BLAST)

001: MAATARARFV HNRSRRRAAD ESSDEQQDAS SSSSSDDDGG DEEEEEMEVE GSEEEEAVAD EPAAREPPAA AGRGGRKGPI TISLKKVCKV CKKTGHEAGF
101: KGAVYIDCPM KPCFLCKMPG HTTLTCPHRV AMEHGVIPAP RRNTNTSLDY VFQSQVKGKI SMVKPRFLVP NQLECGNIKF HQRRVTCLEF HPTKNNVLLS
201: GDKKGLLGIW DYVKLHEKIT YDSVHSCILN SMKFDTANDG VLYTASSDGT ISSTDLDTGI GSPLLNLNPD GWSGPSTWRM IYGMDLNTEK GLLLVADSFG
301: FLYLLDRRSK ERIGQPILIH KKGSKVTGLH CNPAQPEVLL SSGNDHFARI WDTRKLDPKS ALASLAHGRV VNSGYFSPRS GNKIMTTCQD NRIRVWDYIF
401: GNLESPSREI VHSHDFNRHL TPFKAEWDPK DYSETVAVIG RYISENYNGV ALHPIDFIDT STGKLLAEVM DPDITTISPV NKLHPQDEIL ATGSSRSIFI
501: WKPKSDIDPT EERTSQKVKE YVYGSGSRKK PNGKHDNSSD DDSDGGGGKS KKAKKTRFTH TAKGKGKSKA

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.