Factsheet for Solyc09g031610.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g021470.2.1
Solyc02g021650.2.1
Solyc02g070460.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G58760.1	Solyc02g021650.2.1	AT4G05420.1	16792691
AT5G58760.1	Solyc02g021650.2.1	AT4G05420.1	18551167
AT5G58760.1	Solyc02g021470.2.1	AT5G46210.1	18551167
AT5G58760.1	Solyc02g070460.2.1	AT5G46210.1	18551167

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400056773	Potato	nucleus	22.32	90.34
VIT_06s0004g06550.t01	Wine grape	nucleus	65.25	68.52
KRH72670	Soybean	cytosol	29.81	66.29
CDY32686	Canola	nucleus	60.48	65.14
CDY02834	Canola	nucleus	60.99	64.74
Bra020355.1-P	Field mustard	nucleus	60.31	64.72
AT5G58760.1	Thale cress	nucleus	61.33	64.63
KRH17028	Soybean	nucleus	61.5	64.35
KRH72668	Soybean	nucleus	31.18	62.89
GSMUA_Achr11P...	Banana	cytosol, mitochondrion, nucleus	56.56	60.58
Os01t0141700-01	Rice	nucleus	54.17	54.55
TraesCS3D01G054200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	52.64	54.21
TraesCS3B01G066200.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	53.15	54.17
TraesCS3A01G054700.1	Wheat	cytosol, mitochondrion, nucleus, peroxisome	52.47	53.85
EES00342	Sorghum	cytosol, mitochondrion, nucleus, peroxisome	52.47	52.83
Zm00001d008597_P001	Maize	mitochondrion, nucleus	48.55	50.0

Protein Annotations

MapMan:14.6.1.3.2	Gene3D:2.130.10.10	InterPro:DDB2	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677
GO:GO:0003684	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006139	GO:GO:0006259	GO:GO:0006281	GO:GO:0006950	GO:GO:0008150
GO:GO:0008152	GO:GO:0008270	GO:GO:0009628	GO:GO:0009987	GO:GO:0010224	GO:GO:0080008
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:K4CSL8	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR15169	PANTHER:PTHR15169:SF0	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:Solyc09g031610.2	EnsemblPlants:Solyc09g031610.2.1	UniParc:UPI000276C706	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

Protein DAMAGED DNA-BINDING 2 [Source:Projected from Arabidopsis thaliana (AT5G58760) UniProtKB/Swiss-Prot;Acc:Q6NQ88]

Coordinates

chr9:-:29163756..29177970

Molecular Weight (calculated)

66095.7 Da

IEP (calculated)

8.567

GRAVY (calculated)

-0.515

Length

587 amino acids

Sequence
(BLAST)

001: MRRRSLFPRV MIDKDTESEK SSSDEEEEDA NVVSPEEERI QKGKTPITVT LKKVCKVCKR SGHEAGFRGA TYIDCPMKPC FLCKLPGHTT VTCPHRVATE
101: YGMHPAPHKN TTNPLEFVFQ RQLHPRLPPI KPAHVIPDQV SCAVIRYHSR RITCLEFHPT NNNILLSGDK KGQLGIWDFG KVHEKTVYGN IHNCILNNMK
201: FNPTNDGSIY AASSDGTISC TDLETGISLS LMNLNPNGWE GPSSWRMLYG LDVNSERNVV LVADNFGYIY MADIRSNNKM SKPTLIHKKG TKVVGLNCNP
301: LQPDLLLSCG NDHFARIWDM RLLEAGSSLY NLEHKRVVSS AYFSPLSGSK ILTTSLDNRI RVWDSIFGNL DNPSREIVHS HDFNRYLTAF RAEWDAKDSS
401: ESLVVIGRYI SENYDGAALH PIDFINIRTG QLVAEVMDPN ITTISSVNKL HPREDILASG SSRSLFIWRP NKLDIALPRE EKRMVLCGEL SKKRNKKHGD
501: DSDDDSENDI FISKDIRFKQ KKHASKSSPY KSRRNKQGEE YLRRVNTHSA PPAHFSSMYI HGSATTPYSA PVMDVNIVVP ASSVAEP

Best Arabidopsis Sequence Match ( AT5G58760.1 )
(BLAST)

001: MSSTRSRRKR DPEIVIARDT DSELSSSEEE EEEEDNYPFS ESEEEDEAVK NGGKIELEKN KAKGKAPITV KLIKKVCKVC KQPGHEAGFK GATYIDCPMK
101: PCFLCKMPGH TTMSCPHRVV TDHGILPTSH RNTKNPIDFV FKRQLQPRIP PIKPKYVIPD QVHCAVIRYH SRRVTCLEFH PTKNNILLSG DKKGQIGVWD
201: FGKVYEKNVY GNIHSVQVNN MRFSPTNDDM VYSASSDGTI GYTDLETGTS STLLNLNPDG WQGANSWKML YGMDINSEKG VVLAADNFGF LHMIDHRTNN
301: STGEPILIHK QGSKVCGLDC NPVQPELLLS CGNDHFARIW DMRKLQPKAS LHDLAHKRVV NSAYFSPSSG TKILTTCQDN RIRIWDSIFG NLDLPSREIV
401: HSNDFNRHLT PFKAEWDPKD TSESLIVIGR YISENYNGTA LHPIDFIDAS NGQLVAEVMD PNITTITPVN KLHPRDDVLA SGSSRSLFIW RPQDNTEMVE
501: EKKDKKIIIC YGDSKKKGKK QKRGSDDEDD EDDIFSSKGK NIKVNKYQAK TTKKTKT

Arabidopsis Description

DDB2Protein DAMAGED DNA-BINDING 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQ88]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.