Factsheet for PGSC0003DMT400023105

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400074970	Potato	cytosol	46.21	87.63
PGSC0003DMT400023111	Potato	cytosol	97.53	74.93
PGSC0003DMT400022865	Potato	cytosol	94.18	72.65
PGSC0003DMT400029607	Potato	cytosol	90.83	69.69
PGSC0003DMT400061802	Potato	cytosol	87.13	67.21
Solyc09g010050.1.1	Tomato	cytosol	87.13	67.21
KRH15695	Soybean	cytosol	40.56	63.01
PGSC0003DMT400097727	Potato	cytosol	18.52	61.05
GSMUA_AchrUn_...	Banana	cytosol	76.19	59.42
KRH37131	Soybean	cytosol, nucleus	77.95	59.41
VIT_05s0020g01320.t01	Wine grape	cytosol	77.95	59.41
KRH12127	Soybean	cytosol	77.78	59.27
KRH02236	Soybean	cytosol, nucleus	77.6	59.14
KRH50876	Soybean	endoplasmic reticulum	77.25	58.87
GSMUA_Achr1P14740_001	Banana	cytosol	76.54	58.33
GSMUA_Achr7P03700_001	Banana	cytosol	76.37	58.2
TraesCS1A01G090000.1	Wheat	cytosol	74.25	56.59
EES00748	Sorghum	cytosol	74.25	56.59
TraesCS1B01G118000.1	Wheat	cytosol	74.25	56.59
TraesCS1D01G098500.3	Wheat	cytosol	74.25	56.59
HORVU1Hr1G020400.1	Barley	cytosol	74.25	56.51
EES19028	Sorghum	cytosol	74.07	56.45
VIT_07s0104g01590.t01	Wine grape	cytosol	73.02	55.87
Zm00001d010858_P007	Maize	cytosol	73.72	55.81
TraesCS1A01G089900.1	Wheat	cytosol, golgi	73.37	55.76
TraesCS1D01G098400.2	Wheat	cytosol	73.37	55.76
TraesCS1B01G117900.1	Wheat	cytosol	73.19	55.63
HORVU1Hr1G020390.1	Barley	cytosol	73.02	55.5
Zm00001d024855_P007	Maize	cytosol	72.31	52.9
PGSC0003DMT400038140	Potato	cytosol	17.64	44.05
PGSC0003DMT400013645	Potato	cytosol	6.0	43.59
PGSC0003DMT400085888	Potato	cytosol	10.23	42.03
PGSC0003DMT400016765	Potato	cytosol	35.63	27.52
PGSC0003DMT400003338	Potato	cytosol	34.92	27.01
CDX91291	Canola	nucleus	4.76	22.13
PGSC0003DMT400063662	Potato	cytosol	10.23	20.0

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	InterPro:Cullin_N	InterPro:Cullin_homology
InterPro:Cullin_homology_sf	InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019538
GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	UniProt:M1AHT2	PFAM:PF00888	PFAM:PF10557
EnsemblPlantsGene:PGSC0003DMG400008948	PGSC:PGSC0003DMG400008948	EnsemblPlants:PGSC0003DMT400023105	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97
SMART:SM00182	SMART:SM00884	SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI000295E8E7
InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	:	:	:	:

Description

Cullin 1B [Source:PGSC_GENE;Acc:PGSC0003DMG400008948]

Coordinates

chr9:-:2536164..2537867

Molecular Weight (calculated)

65298.6 Da

IEP (calculated)

6.582

GRAVY (calculated)

-0.303

Length

567 amino acids

Sequence
(BLAST)

001: MCFRDLVYEE LKGKARDAVI VLIEQEREGE QIDRGLLKNV LDIFVGIGMG YMEYYENDFE DAMLKHTAAY YSRKASSWIV EDSCPDYMLK AEDCLKKEKD
101: RVSHYLHVIS ETKFLEKVQN ELLVVYTNEL LEKEHSGCRV LLRDDKVEDL SRMYRLFHRI NKGLEPVSIM FKQHVVAEGM VLVQQVEDTT NSKSETPFFV
201: RKLIELYDKY MAYVTNCFAN NSLFHKALKE AFEVFCNKIV SGCSSAELLA SYCDNILKKG GSEKLSDDAI EETLDKVVKL LAYINDKDLF AEFCRKKLSR
301: RLLFDKSAND EHERFILTKL KQQCGGQFTS KMEGMLTDLT LAKENQNNFQ EYLTNNPSTS PGIDFSVTVL TSGFWPSYKS CDLSLPVEMA KCVQVFNEFY
401: QTKTKHRKLT WIYSLGTCNV NGKFDSKTIE LILGTYQAAV LLLFNSSDRL SYSEIKSQLN LADDDLIRLL QSLSCAKYKI LIKEPSNTIV SSSDHFEFNS
501: KFTDRMGRIR VPLPPVDERK KVVEDVGKDR RYAIDACIVR IMKSRKVLPH QQLVAECVEY LSSMFNA

Best Arabidopsis Sequence Match ( AT1G02980.2 )
(BLAST)

001: MAKKDSVLEA GWSVMEAGVA KLQKILEEVP DEPPFDPVQR MQLYTTVHNL CTQKPPNDYS QQIYDRYGGV YVDYNKQTVL PAIREKHGEY MLRELVKRWA
101: NQKILVRWLS HFFEYLDRFY TRRGSHPTLS AVGFISFRDL VYQELQSKAK DAVLALIHKE REGEQIDRAL LKNVIDVYCG NGMGELVKYE EDFESFLLED
201: SASYYSRNAS RWNQENSCPD YMIKAEESLR LEKERVTNYL HSTTEPKLVA KVQNELLVVV AKQLIENEHS GCRALLRDDK MDDLARMYRL YHPIPQGLDP
301: VADLFKQHIT VEGSALIKQA TEAATDKAAS TSGLKVQDQV LIRQLIDLHD KFMVYVDECF QKHSLFHKAL KEAFEVFCNK TVAGVSSAEI LATYCDNILK
401: TGGGIEKLEN EDLELTLEKV VKLLVYISDK DLFAEFFRKK QARRLLFDRN GNDYHERSLL TKFKELLGAQ FTSKMEGMLT DMTLAKEHQT NFVEFLSVNK
501: TKKLGMDFTV TVLTTGFWPS YKTTDLNLPI EMVNCVEAFK AYYGTKTNSR RLSWIYSLGT CQLAGKFDKK TIEIVVTTYQ AAVLLLFNNT ERLSYTEILE
601: QLNLGHEDLA RLLHSLSCLK YKILIKEPMS RNISNTDTFE FNSKFTDKMR RIRVPLPPMD ERKKIVEDVD KDRRYAIDAA LVRIMKSRKV LGHQQLVSEC
701: VEHLSKMFKP DIKMIKKRIE DLISRDYLER DTDNPNTFKY LA

Arabidopsis Description

CUL2Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.