Factsheet for Solyc05g018040.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os05t0149600-02	Rice	cytosol, plasma membrane	26.69	25.87
Solyc01g067140.1.1	Tomato	cytosol	41.04	25.5
Solyc06g084520.2.1	Tomato	cytosol	70.12	23.78
Solyc09g074680.2.1	Tomato	cytosol	70.12	23.78
Solyc09g010050.1.1	Tomato	cytosol	67.33	22.99
GSMUA_AchrUn_...	Banana	cytosol	63.35	21.87
Solyc01g067100.2.1	Tomato	cytosol	64.14	21.7
GSMUA_Achr1P14740_001	Banana	cytosol	63.74	21.51
GSMUA_Achr7P03700_001	Banana	cytosol	63.35	21.37
Os01t0369000-01	Rice	cytosol	59.76	20.16
EES00748	Sorghum	cytosol	59.76	20.16
Solyc01g067210.2.1	Tomato	cytosol	45.42	20.04
EES19028	Sorghum	cytosol	58.57	19.76
TraesCS1A01G090000.1	Wheat	cytosol	58.57	19.76
TraesCS1B01G118000.1	Wheat	cytosol	58.57	19.76
TraesCS1D01G098500.3	Wheat	cytosol	58.57	19.76
HORVU1Hr1G020400.1	Barley	cytosol	58.57	19.73
Zm00001d010858_P007	Maize	cytosol	58.17	19.49
TraesCS1D01G098400.2	Wheat	cytosol	57.37	19.3
TraesCS1A01G089900.1	Wheat	cytosol, golgi	57.37	19.3
TraesCS1B01G117900.1	Wheat	cytosol	56.97	19.17
Solyc06g008710.1.1	Tomato	cytosol	56.57	19.11
HORVU1Hr1G020390.1	Barley	cytosol	56.57	19.03
Zm00001d024855_P007	Maize	cytosol	58.17	18.84
Solyc01g067270.2.1	Tomato	cytosol	9.56	10.48
Solyc02g087900.2.1	Tomato	cytosol	26.69	9.14
Solyc02g021470.2.1	Tomato	cytosol, nucleus, plastid	28.29	9.04
Solyc02g070460.2.1	Tomato	plastid	28.69	8.98
Solyc01g010820.2.1	Tomato	cytosol	25.1	8.58
Solyc01g067170.1.1	Tomato	mitochondrion, plastid	3.59	6.72
Solyc01g099290.2.1	Tomato	cytosol	2.79	2.63
Solyc06g008080.1.1	Tomato	cytosol	3.19	2.61
Solyc01g067120.2.1	Tomato	cytosol	1.59	2.38
Solyc01g067200.1.1	Tomato	cytosol	1.59	2.08
Solyc01g067260.2.1	Tomato	plastid	1.59	1.91

Protein Annotations

Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:35.1	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538	GO:GO:0031461	GO:GO:0031625
GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158	UniProt:K4BZ62	PFAM:PF00888	PFscan:PS50069
PANTHER:PTHR11932	PANTHER:PTHR11932:SF124	SMART:SM00182	SUPFAM:SSF75632	EnsemblPlantsGene:Solyc05g018040.1	EnsemblPlants:Solyc05g018040.1.1
UniParc:UPI0002767049	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:19865443..19867438

Molecular Weight (calculated)

28520.4 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.211

Length

251 amino acids

Sequence
(BLAST)

001: MVMDDMRKVV LQASKFRLSS SLALKEAFEF FCNKIVSGCS SVVLLASNCD YIYKTGGSEK LSDDANEETS DKGVKILVYI NDKDLFAEFC GKKLSHRLLF
101: DKSASDDHER LIIMVGMVTD MTLATENQNN FQEYLSNNPN PGIDLTVAAL TSRFWQSHKS NYLSLLVEMV KCVQVFKEFY ETKAKHRKFT WTYSLGTCNV
201: NGKFDSKTIE LILGTYSGKT LKRSKMKNNL GKIFPFLIPL QIECDMSCYE P

Best Arabidopsis Sequence Match ( AT1G02980.2 )
(BLAST)

001: MAKKDSVLEA GWSVMEAGVA KLQKILEEVP DEPPFDPVQR MQLYTTVHNL CTQKPPNDYS QQIYDRYGGV YVDYNKQTVL PAIREKHGEY MLRELVKRWA
101: NQKILVRWLS HFFEYLDRFY TRRGSHPTLS AVGFISFRDL VYQELQSKAK DAVLALIHKE REGEQIDRAL LKNVIDVYCG NGMGELVKYE EDFESFLLED
201: SASYYSRNAS RWNQENSCPD YMIKAEESLR LEKERVTNYL HSTTEPKLVA KVQNELLVVV AKQLIENEHS GCRALLRDDK MDDLARMYRL YHPIPQGLDP
301: VADLFKQHIT VEGSALIKQA TEAATDKAAS TSGLKVQDQV LIRQLIDLHD KFMVYVDECF QKHSLFHKAL KEAFEVFCNK TVAGVSSAEI LATYCDNILK
401: TGGGIEKLEN EDLELTLEKV VKLLVYISDK DLFAEFFRKK QARRLLFDRN GNDYHERSLL TKFKELLGAQ FTSKMEGMLT DMTLAKEHQT NFVEFLSVNK
501: TKKLGMDFTV TVLTTGFWPS YKTTDLNLPI EMVNCVEAFK AYYGTKTNSR RLSWIYSLGT CQLAGKFDKK TIEIVVTTYQ AAVLLLFNNT ERLSYTEILE
601: QLNLGHEDLA RLLHSLSCLK YKILIKEPMS RNISNTDTFE FNSKFTDKMR RIRVPLPPMD ERKKIVEDVD KDRRYAIDAA LVRIMKSRKV LGHQQLVSEC
701: VEHLSKMFKP DIKMIKKRIE DLISRDYLER DTDNPNTFKY LA

Arabidopsis Description

CUL2Cullin-2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRZ0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.