Factsheet for AT1G43140.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400013645	Potato	cytosol	8.46	78.21
AT1G02980.1	Thale cress	cytosol	79.89	77.63
AT4G02570.1	Thale cress	cytosol	71.71	70.05
CDY32488	Canola	cytosol	66.44	64.91
Bra034597.1-P	Field mustard	cytosol	65.6	64.71
CDY51951	Canola	cytosol	65.74	64.31
Bra032576.1-P	Field mustard	cytosol	65.74	64.23
AT1G59790.1	Thale cress	cytosol	32.73	63.1
CDY51862	Canola	cytosol	25.24	62.98
CDX89926	Canola	cytosol	62.69	62.87
Bra033362.1-P	Field mustard	cytosol	62.41	62.85
CDX89925	Canola	cytosol	62.0	61.32
Bra033363.1-P	Field mustard	cytosol	62.83	58.23
CDY51863	Canola	cytosol	34.4	57.41
AT1G59800.1	Thale cress	cytosol	19.42	54.9
Solyc06g008710.1.1	Tomato	cytosol	55.34	53.7
Bra032570.1-P	Field mustard	cytosol	48.96	50.72
CDY37452	Canola	cytosol	8.74	48.09
CDY18137	Canola	cytosol	63.52	31.22
AT1G69670.1	Thale cress	cytosol	31.07	30.6
AT1G26830.1	Thale cress	cytosol	30.93	30.46
AT5G46210.1	Thale cress	cytosol	29.4	26.77

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:19.2.2.8.1.2	EntrezGene:3767291	EMBL:AC005687
ProteinID:AEE31948.1	ArrayExpress:AT1G43140	EnsemblPlantsGene:AT1G43140	RefSeq:AT1G43140	TAIR:AT1G43140	RefSeq:AT1G43140-TAIR-G
EnsemblPlants:AT1G43140.1	TAIR:AT1G43140.1	Unigene:At.74523	InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf
InterPro:Cullin_neddylation_domain	InterPro:Cullin_repeat-like_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006464	GO:GO:0006511	GO:GO:0008150
GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016567	GO:GO:0016740	GO:GO:0019538
GO:GO:0031461	GO:GO:0031625	GO:GO:0042787	GO:GO:0061630	InterPro:IPR016158	InterPro:IPR036388
RefSeq:NP_175007.2	UniProt:P0CH31	PFAM:PF00888	PFAM:PF10557	PO:PO:0007611	PO:PO:0009005
PO:PO:0009046	PFscan:PS50069	PANTHER:PTHR11932	PANTHER:PTHR11932:SF97	SMART:SM00182	SMART:SM00884
SUPFAM:SSF46785	SUPFAM:SSF74788	SUPFAM:SSF75632	UniParc:UPI0001A7B227	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf
SEG:seg	:	:	:	:	:

Description

Putative cullin-like protein 1 [Source:UniProtKB/Swiss-Prot;Acc:P0CH31]

Coordinates

chr1:+:16232785..16236109

Molecular Weight (calculated)

83858.5 Da

IEP (calculated)

7.063

GRAVY (calculated)

-0.309

Length

721 amino acids

Sequence
(BLAST)

001: MATILFKVIM MKELILLEEG WSVMKTGVAK LQRILEDLSE PPFDPGQYIN LYTIIYDMCL QQPPNDYSQE LYNKYRGVVD HYNKETVLPS MRERHGEYML
101: RELVKRWANH KILVRWLSRF CFYLDRFYVA RRGLPTLNDV GFTSFHDLVY QEIQSEAKDV LLALIHKERE GEQIDRTLVK NVIDVYCGNG VGQMVIYEED
201: FESFLLQDTA SYYSRKASRW SQEDSCPDYM LKAEECLKLE KERVTNYLHS TTEPKLVEKV QNELLVVVAK QLIENEHSGC LALLRDDKMG DLSRMYRLYR
301: LIPQGLEPIA DLFKQHVTAE GNALIKQAAD AATNQDASAS QVLVRKEIEL HDKYMVYVDE CFQKHSLFHK LLKEAFEVFC NKTVAGASSA EILATYCDNI
401: LKTRGGSEKL SDEATEITLE KVVNLLVYIS DKDLFAEFYR KKQARRLLFD RSGIMKEVTD ITLARELQTN FVDYLSANMT TKLGIDFTVT VLTTGFWPSY
501: KTTDLNLPTE MVNCVEAFKV FYGTKTNSRR LSWIYSLGTC HILGKFEKKT MELVVSTYQA AVLLLFNNAE RLSYTEISEQ LNLSHEDLVR LLHSLSCLKY
601: KILIKEPMSR TISKTDTFEF NSKFTDKMRK IRVPLPPMDE RKKVVEDVDK DRRYAIDAAL VRIMKSRKVL AHQQLVSECV EHLSKMFKPD IKMIKKRIED
701: LINRDYLERD TENANTFKYV A

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.