Factsheet for VIT_13s0067g02290.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 1
plastid 3
cytosol 2
plasma membrane 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071906	Potato	cytosol	53.33	71.64
Solyc06g050860.2.1	Tomato	cytosol	69.26	67.03
PGSC0003DMT400097598	Potato	cytosol	40.0	55.67
KRH31216	Soybean	cytosol, plastid	53.7	53.9
KRG97659	Soybean	cytosol, plastid	52.96	53.16
Bra007229.1-P	Field mustard	cytosol	55.19	52.65
CDY27231	Canola	cytosol	55.19	52.65
CDX72156	Canola	cytosol	54.44	51.94
AT3G56230.1	Thale cress	cytosol	53.7	51.42
GSMUA_Achr5P29570_001	Banana	cytosol	50.37	48.4
Solyc05g052290.1.1	Tomato	cytosol	45.93	46.62
Os12t0111500-02	Rice	cytosol	43.33	42.55
Os11t0111900-01	Rice	cytosol	42.59	41.82
EES09114	Sorghum	cytosol	42.22	41.16
HORVU4Hr1G022110.3	Barley	cytosol	42.96	40.7
TraesCS4A01G196800.2	Wheat	cytosol	42.96	40.56
TraesCS4D01G116200.2	Wheat	cytosol	42.96	40.56
TraesCS4B01G118500.1	Wheat	cytosol	42.59	40.21
CDY32006	Canola	nucleus	34.07	39.83
Zm00001d036840_P001	Maize	cytosol	42.59	39.66
VIT_18s0001g01590.t01	Wine grape	cytosol	20.37	20.83

Protein Annotations

EntrezGene:100255303	wikigene:100255303	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom	ProteinID:CCB49815
ProteinID:CCB49815.1	UniProt:F6HC57	EMBL:FN595514	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0006464
GO:GO:0006508	GO:GO:0006751	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987
GO:GO:0016787	GO:GO:0019005	GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0036374
GO:GO:0042787	GO:GO:0043161	InterPro:IPR000210	EntrezGene:LOC100255303	wikigene:LOC100255303	PFAM:PF00651
PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164	InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI000210A6F2	ArrayExpress:VIT_13s0067g02290	EnsemblPlantsGene:VIT_13s0067g02290	EnsemblPlants:VIT_13s0067g02290.t01	RefSeq:XP_003633433	RefSeq:XP_003633433.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr13:-:1280451..1282648

Molecular Weight (calculated)

29934.6 Da

IEP (calculated)

5.972

GRAVY (calculated)

-0.203

Length

270 amino acids

Sequence
(BLAST)

001: MDCSICSAVP FILRPPRNTI CAACYESARS IVAFINKLEN DKGFDKSNNS IVSPANSSKG FSNALKWVKE MKEIEEELNE KLSFLGGFAA AFRDQIHTDI
101: EVKPGHNGPS LFAHRALLAA RSEIFKNMLD SDGCKAAPSN TITLPELNHE ELDSLLEFLY SGSLPADKVE KHVYSLSLAA DKYEIPFLQK FCEQRMLGSL
201: SSSSALDVLE ISDACSSQTV KETALNYIVK NMEDIVFSTR YESFALKNPH LCVQITRASF MDAKNRKNGV

Best Arabidopsis Sequence Match ( AT3G56230.1 )
(BLAST)

001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD

Arabidopsis Description

BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.