Factsheet for VIT_18s0001g01590.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
plasma membrane 1
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_01s0026g02230.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08455.1	VIT_01s0026g02230.t01	AT1G26830.1	15749712
AT4G08455.1	VIT_01s0026g02230.t01	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G08455.1	Thale cress	cytosol	71.59	70.0
CDX83137	Canola	cytosol	69.7	68.91
CDY34002	Canola	cytosol	18.18	67.61
CDY34003	Canola	nucleus	42.42	64.74
GSMUA_Achr8P32570_001	Banana	cytosol	60.23	64.37
Solyc02g032510.2.1	Tomato	cytosol	67.42	63.8
Os07t0258700-01	Rice	cytosol	57.95	62.2
OQU88783	Sorghum	cytosol	58.71	60.55
TraesCS6A01G046100.1	Wheat	cytosol	33.71	60.14
Zm00001d019328_P003	Maize	cytosol	58.33	57.46
TraesCS6B01G062000.1	Wheat	cytosol	54.17	56.52
KRH64603	Soybean	cytosol	54.55	55.81
TraesCS6A01G045900.1	Wheat	cytosol	54.17	55.64
TraesCS6D01G053100.1	Wheat	cytosol	54.17	55.64
HORVU6Hr1G009330.1	Barley	cytosol	54.55	54.14
KRH53314	Soybean	cytosol, mitochondrion	53.03	53.85
VIT_13s0067g02290.t01	Wine grape	cytosol, plastid	20.83	20.37

Protein Annotations

Gene3D:1.25.40.420	EntrezGene:100243658	wikigene:100243658	Gene3D:3.30.710.10	MapMan:35.1	InterPro:BTB/POZ_dom
ProteinID:CCB45444	ProteinID:CCB45444.1	ncoils:Coil	UniProt:F6H0H2	EMBL:FN595227	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0019005
GO:GO:0019538	GO:GO:0030162	GO:GO:0031625	GO:GO:0042787	GO:GO:0043161	InterPro:IPR000210
EntrezGene:LOC100243658	wikigene:LOC100243658	PFAM:PF00651	PFscan:PS50097	PANTHER:PTHR24413	PANTHER:PTHR24413:SF131
InterPro:SKP1/BTB/POZ_sf	SMART:SM00225	SUPFAM:SSF54695	TIGR:TC53675	UniParc:UPI00019853AF	ArrayExpress:VIT_18s0001g01590
EnsemblPlantsGene:VIT_18s0001g01590	EnsemblPlants:VIT_18s0001g01590.t01	unigene:Vvi.2781	RefSeq:XP_002285888	RefSeq:XP_002285888.1	SEG:seg

Description

No Description!

Coordinates

chr18:+:2174967..2177070

Molecular Weight (calculated)

29842.3 Da

IEP (calculated)

4.940

GRAVY (calculated)

-0.351

Length

264 amino acids

Sequence
(BLAST)

001: MHRRRCTVST SASESETETE TELMRCISCR EDYGRIDAGT CKECYEEASE TEEELKREIE ELKAKVAFLR CSSPLDHSHR RSFSDVILVA SNDDSAASAA
101: PVPAHKSVLA SRSPVFKAML ENEMEESLSG TIKISDVSYE ALRCFVNYLY TAEACLDEPM ACDLLVLAEK YQVKHLKAYC EKFMVSKLNW DNSVISFAFA
201: HQHNAKLLID AALSVITDNM DKLTKREEYI ELVEKDPRLV VEIYEAYLSK QVNTAAHKDS SLKP

Best Arabidopsis Sequence Match ( AT4G08455.1 )
(BLAST)

001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS

Arabidopsis Description

BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.