Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P18000_001 | |
| GSMUA_Achr8P16990_001 | |
| GSMUA_AchrUn_... | |
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os07t0258700-01 | Rice | cytosol | 69.64 | 69.92 |
| TraesCS6A01G046100.1 | Wheat | cytosol | 38.87 | 64.86 |
| OQU88783 | Sorghum | cytosol | 66.8 | 64.45 |
| TraesCS6B01G062000.1 | Wheat | cytosol | 65.59 | 64.03 |
| Zm00001d019328_P003 | Maize | cytosol | 69.23 | 63.81 |
| TraesCS6A01G045900.1 | Wheat | cytosol | 65.59 | 63.03 |
| TraesCS6D01G053100.1 | Wheat | cytosol | 65.59 | 63.03 |
| HORVU6Hr1G009330.1 | Barley | cytosol | 65.59 | 60.9 |
| VIT_18s0001g01590.t01 | Wine grape | cytosol | 64.37 | 60.23 |
| CDY34003 | Canola | nucleus | 40.49 | 57.8 |
| CDX83137 | Canola | cytosol | 61.54 | 56.93 |
| AT4G08455.1 | Thale cress | cytosol | 61.94 | 56.67 |
| Solyc02g032510.2.1 | Tomato | cytosol | 62.35 | 55.2 |
| CDY34002 | Canola | cytosol | 14.57 | 50.7 |
| KRH53314 | Soybean | cytosol, mitochondrion | 52.23 | 49.62 |
| KRH64603 | Soybean | cytosol | 51.42 | 49.22 |
| GSMUA_Achr5P29570_001 | Banana | cytosol | 23.48 | 20.64 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr8P32570_001 | EnsemblPlants:GSMUA_Achr8T32570_001 | EnsemblPlantsGene:GSMUA_Achr8G32570_001 | Gene3D:1.25.40.420 | Gene3D:3.30.710.10 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | InterPro:BTB/POZ_dom | InterPro:IPR000210 | InterPro:SKP1/BTB/POZ_sf | ncoils:Coil |
| PANTHER:PTHR24413 | PANTHER:PTHR24413:SF131 | PFAM:PF00651 | PFscan:PS50097 | SEG:seg | SMART:SM00225 |
| SUPFAM:SSF54695 | UniParc:UPI000295FE16 | UniProt:M0TVK9 | MapMan:35.1 | : | : |
Description
C2-BTB1 - Bric-a-Brac, Tramtrack, Broad Complex BTB domain with C2 subfamily conserved sequence, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr8G32570_001]
Coordinates
chr8:+:33919093..33921350
Molecular Weight (calculated)
28113.3 Da
IEP (calculated)
4.805
GRAVY (calculated)
-0.331
Length
247 amino acids
Sequence
(BLAST)
(BLAST)
001: MWCQSCREEY EERDAGTCKE CYEEASETEE ELKREIDDLK SKVAFLRLAS PHDLVSTTDL VLHASSSTSP SSPSNPNSSL CTTPAVPAHR AVLISRSPVF
101: KAMLENEMEE SRSGIIKIYD VSYDVLRSFV HYLYTAEVLL DEHMACDLLI LAEKYQVKHL KIFCEKFMTS KVNSENAVAS YAFAHRHNAK QLLEASLSLI
201: MDNMATLTER EEYKELVEKD PRLVVEIYEA YLTRQVNTAA KDLTLQP
101: KAMLENEMEE SRSGIIKIYD VSYDVLRSFV HYLYTAEVLL DEHMACDLLI LAEKYQVKHL KIFCEKFMTS KVNSENAVAS YAFAHRHNAK QLLEASLSLI
201: MDNMATLTER EEYKELVEKD PRLVVEIYEA YLTRQVNTAA KDLTLQP
001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS
Arabidopsis Description
BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.