Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS6A01G306600.1 | |
| TraesCS6B01G335200.1 | |
| TraesCS6D01G285800.1 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G062000.1 | Wheat | cytosol | 95.27 | 55.73 |
| TraesCS6D01G053100.1 | Wheat | cytosol | 95.95 | 55.25 |
| TraesCS6A01G045900.1 | Wheat | cytosol | 95.95 | 55.25 |
| HORVU6Hr1G009330.1 | Barley | cytosol | 93.92 | 52.26 |
| Os07t0258700-01 | Rice | cytosol | 75.68 | 45.53 |
| OQU88783 | Sorghum | cytosol | 78.38 | 45.31 |
| CDY34002 | Canola | cytosol | 21.62 | 45.07 |
| Zm00001d019328_P003 | Maize | cytosol | 77.03 | 42.54 |
| GSMUA_Achr8P32570_001 | Banana | cytosol | 64.86 | 38.87 |
| VIT_18s0001g01590.t01 | Wine grape | cytosol | 60.14 | 33.71 |
| AT4G08455.1 | Thale cress | cytosol | 57.43 | 31.48 |
| CDX83137 | Canola | cytosol | 56.08 | 31.09 |
| Solyc02g032510.2.1 | Tomato | cytosol | 58.11 | 30.82 |
| KRH64603 | Soybean | cytosol | 49.32 | 28.29 |
| KRH53314 | Soybean | cytosol, mitochondrion | 47.97 | 27.31 |
| CDY34003 | Canola | nucleus | 24.32 | 20.81 |
| TraesCS4A01G196800.2 | Wheat | cytosol | 21.62 | 11.19 |
Protein Annotations
| EnsemblPlants:TraesCS6A01G046100.1 | EnsemblPlantsGene:TraesCS6A01G046100 | Gene3D:1.25.40.420 | Gene3D:3.30.710.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:BTB/POZ_dom | InterPro:IPR000210 | InterPro:SKP1/BTB/POZ_sf | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF131 |
| PFAM:PF00651 | PFscan:PS50097 | SUPFAM:SSF54695 | TIGR:cd14821 | MapMan:35.1 | : |
Description
No Description!
Coordinates
chr6A:+:23648324..23648770
Molecular Weight (calculated)
17195.4 Da
IEP (calculated)
4.779
GRAVY (calculated)
-0.419
Length
148 amino acids
Sequence
(BLAST)
(BLAST)
001: MLDNEMEESR SGVIEMYDVS YDVLHAFFHY MYTGEALLDE QMACDLLVLA EKYEVKHLKT YCEKFITSKV NNDNAIVHYA FAHRHGAKQL LEASMSALMD
101: SMPTLAERGE YKELVERDPR ILVEIYETYV SRQDNTAAKR DSDCCCRK
101: SMPTLAERGE YKELVERDPR ILVEIYETYV SRQDNTAAKR DSDCCCRK
001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS
Arabidopsis Description
BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.