Factsheet for TraesCS6D01G053100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS6A01G306600.1
TraesCS6B01G335200.1
TraesCS6D01G285800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G08455.1	TraesCS6A01G306600.1	AT1G26830.1	15749712
AT4G08455.1	TraesCS6B01G335200.1	AT1G26830.1	15749712
AT4G08455.1	TraesCS6D01G285800.1	AT1G26830.1	15749712
AT4G08455.1	TraesCS6A01G306600.1	AT1G69670.1	15749712
AT4G08455.1	TraesCS6B01G335200.1	AT1G69670.1	15749712
AT4G08455.1	TraesCS6D01G285800.1	AT1G69670.1	15749712

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G045900.1	Wheat	cytosol	99.22	99.22
TraesCS6A01G046100.1	Wheat	cytosol	55.25	95.95
TraesCS6B01G062000.1	Wheat	cytosol	93.77	95.26
HORVU6Hr1G009330.1	Barley	cytosol	91.44	88.35
Os07t0258700-01	Rice	cytosol	75.1	78.46
OQU88783	Sorghum	cytosol	77.43	77.73
Zm00001d019328_P003	Maize	cytosol	77.04	73.88
GSMUA_Achr8P32570_001	Banana	cytosol	63.03	65.59
VIT_18s0001g01590.t01	Wine grape	cytosol	55.64	54.17
CDY34003	Canola	nucleus	34.63	51.45
CDX83137	Canola	cytosol	53.31	51.31
Solyc02g032510.2.1	Tomato	cytosol	54.86	50.54
AT4G08455.1	Thale cress	cytosol	52.53	50.0
KRH64603	Soybean	cytosol	47.47	47.29
CDY34002	Canola	cytosol	12.84	46.48
KRH53314	Soybean	cytosol, mitochondrion	46.3	45.77
TraesCS4D01G116200.2	Wheat	cytosol	21.4	19.23

Protein Annotations

EnsemblPlants:TraesCS6D01G053100.1	EnsemblPlantsGene:TraesCS6D01G053100	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	ncoils:Coil	PANTHER:PTHR24413
PANTHER:PTHR24413:SF131	PFAM:PF00651	PFscan:PS50097	SEG:seg	SMART:SM00225	SUPFAM:SSF54695
TIGR:cd14821	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr6D:+:25633179..25636907

Molecular Weight (calculated)

28975.1 Da

IEP (calculated)

4.589

GRAVY (calculated)

-0.429

Length

257 amino acids

Sequence
(BLAST)

001: MYCQSCKNVY DEEDAGTCKE CYEEASETEE ELKREIDDLR SRLLFLRLPS PTLDASAAGH SDLLLHAIPA SSSSSSPSPS GDADGARLDT PAVPAHRVIL
101: ASRSPVFRAM LDSEMEESRS GVIKMYDVSY DVLRAFVHYM YTGEALLDEQ MACDLLVLAE KYEVKHLKTY CEKFITSKVN NDNAIVHYAF AHRHGAKQLL
201: EASMSALMDS MPTLAEREEY KELVERDPRI LVEIYETYVS RQDNTAAERD SDCCCRK

Best Arabidopsis Sequence Match ( AT4G08455.1 )
(BLAST)

001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS

Arabidopsis Description

BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.