Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| HORVU6Hr1G075720.2 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G08455.1 | HORVU6Hr1G075720.2 | AT1G26830.1 | 15749712 |
| AT4G08455.1 | HORVU6Hr1G075720.2 | AT1G69670.1 | 15749712 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G062000.1 | Wheat | cytosol | 91.73 | 96.44 |
| TraesCS6A01G046100.1 | Wheat | cytosol | 52.26 | 93.92 |
| TraesCS6D01G053100.1 | Wheat | cytosol | 88.35 | 91.44 |
| TraesCS6A01G045900.1 | Wheat | cytosol | 88.35 | 91.44 |
| Os07t0258700-01 | Rice | cytosol | 71.43 | 77.24 |
| OQU88783 | Sorghum | cytosol | 73.31 | 76.17 |
| Zm00001d019328_P003 | Maize | cytosol | 73.68 | 73.13 |
| GSMUA_Achr8P32570_001 | Banana | cytosol | 60.9 | 65.59 |
| VIT_18s0001g01590.t01 | Wine grape | cytosol | 54.14 | 54.55 |
| CDY34003 | Canola | nucleus | 33.83 | 52.02 |
| Solyc02g032510.2.1 | Tomato | cytosol | 54.51 | 51.97 |
| CDX83137 | Canola | cytosol | 51.88 | 51.69 |
| AT4G08455.1 | Thale cress | cytosol | 51.88 | 51.11 |
| KRH64603 | Soybean | cytosol | 46.24 | 47.67 |
| CDY34002 | Canola | cytosol | 12.41 | 46.48 |
| KRH53314 | Soybean | cytosol, mitochondrion | 45.11 | 46.15 |
| HORVU4Hr1G022110.3 | Barley | cytosol | 20.68 | 19.3 |
Protein Annotations
| EnsemblPlants:HORVU6Hr1G009330.1 | EnsemblPlantsGene:HORVU6Hr1G009330 | Gene3D:1.25.40.420 | Gene3D:3.30.710.10 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | InterPro:BTB/POZ_dom | InterPro:IPR000210 | InterPro:SKP1/BTB/POZ_sf | ncoils:Coil | PANTHER:PTHR24413 |
| PANTHER:PTHR24413:SF131 | PFAM:PF00651 | PFscan:PS50097 | SEG:seg | SMART:SM00225 | SUPFAM:SSF54695 |
| UniParc:UPI000B46A881 | UniProt:A0A287T988 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chrchr6H:+:16623868..16627690
Molecular Weight (calculated)
30210.7 Da
IEP (calculated)
4.631
GRAVY (calculated)
-0.440
Length
266 amino acids
Sequence
(BLAST)
(BLAST)
001: SALAGRRRLE EEMYCQSCKN VYDEEDAGTC KECYEEASET EEELKREIDD LRSRLLFLRL PSPTLDASSA VGHSDLLLHA IPASSPSPSA DADGVRLDTP
101: AVPAHRVILA SRSPVFRAML DSEMEESRSG VIKMYDVSYD VLRAFVHYMY TGEALLDEQM ACDLLVLAEK YEVKHLKTYC EKFITSKVNN DNAIIHYAFA
201: HRHGAKQLLE ASMSALMESM PTLAEREEYK ELVERDPRIL VEIYETYVSR QDNTATERDS DCCCRK
101: AVPAHRVILA SRSPVFRAML DSEMEESRSG VIKMYDVSYD VLRAFVHYMY TGEALLDEQM ACDLLVLAEK YEVKHLKTYC EKFITSKVNN DNAIIHYAFA
201: HRHGAKQLLE ASMSALMESM PTLAEREEYK ELVERDPRIL VEIYETYVSR QDNTATERDS DCCCRK
001: MRRHHHRCQI GSDSETGSES DSDTDTPMRC ISCREEYLPR NAGTCKECYV EAGETEEELK REIDDLKAKV AFLRLSSSLD HGTSSTSRSF TDVVLIASED
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS
101: NAGSPPIPAH KSVLVSRSPV FKAMLENEME ESLSGTIKIS DVSYDALRTF VYYLYTAEAC LDEQMACDLL VMSEKYQVKH LKSYCERFLV TKLSPDNSLM
201: TYAFAHQHNA KHVLDAALSQ IVENMDKLTK REEYMELVEK DPRLIVEIYE AYLSKQVNTA AGGTSTSKTS
Arabidopsis Description
BTB/POZ domain-containing protein [Source:TAIR;Acc:AT4G08455]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.