Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007229.1-P | Field mustard | cytosol | 83.69 | 83.39 |
| CDY27231 | Canola | cytosol | 83.69 | 83.39 |
| CDX72156 | Canola | cytosol | 82.98 | 82.69 |
| CDY32006 | Canola | nucleus | 56.74 | 69.26 |
| VIT_13s0067g02290.t01 | Wine grape | cytosol, plastid | 51.42 | 53.7 |
| PGSC0003DMT400071906 | Potato | cytosol | 37.59 | 52.74 |
| Solyc06g050860.2.1 | Tomato | cytosol | 49.65 | 50.18 |
| KRH31216 | Soybean | cytosol, plastid | 46.81 | 49.07 |
| KRG97659 | Soybean | cytosol, plastid | 46.45 | 48.7 |
| PGSC0003DMT400097598 | Potato | cytosol | 31.21 | 45.36 |
| GSMUA_Achr5P29570_001 | Banana | cytosol | 40.78 | 40.93 |
| AT1G01640.1 | Thale cress | cytosol | 29.79 | 40.58 |
| Solyc05g052290.1.1 | Tomato | cytosol | 37.94 | 40.23 |
| TraesCS4B01G118500.1 | Wheat | cytosol | 39.36 | 38.81 |
| Os11t0111900-01 | Rice | cytosol | 37.59 | 38.55 |
| Os12t0111500-02 | Rice | cytosol | 37.59 | 38.55 |
| TraesCS4A01G196800.2 | Wheat | cytosol | 39.01 | 38.46 |
| TraesCS4D01G116200.2 | Wheat | cytosol | 38.65 | 38.11 |
| EES09114 | Sorghum | cytosol | 37.23 | 37.91 |
| Zm00001d036840_P001 | Maize | cytosol | 38.65 | 37.59 |
| HORVU4Hr1G022110.3 | Barley | cytosol | 37.23 | 36.84 |
| AT2G40450.1 | Thale cress | cytosol | 23.05 | 31.1 |
| AT4G04090.1 | Thale cress | cytosol | 19.5 | 28.65 |
| AT2G05330.1 | Thale cress | cytosol | 19.86 | 26.05 |
| AT5G48510.1 | Thale cress | cytosol | 20.21 | 25.45 |
| AT4G08455.1 | Thale cress | cytosol | 20.21 | 21.11 |
Protein Annotations
| Gene3D:1.25.40.420 | Gene3D:3.30.710.10 | MapMan:35.1 | EntrezGene:824789 | ProteinID:AEE79499.1 | EMBL:AK176299 |
| ArrayExpress:AT3G56230 | EnsemblPlantsGene:AT3G56230 | RefSeq:AT3G56230 | TAIR:AT3G56230 | RefSeq:AT3G56230-TAIR-G | EnsemblPlants:AT3G56230.1 |
| TAIR:AT3G56230.1 | EMBL:BT012360 | InterPro:BTB/POZ_dom | ProteinID:CAB87422.1 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009987 | GO:GO:0016567 | GO:GO:0019005 |
| GO:GO:0019538 | GO:GO:0030162 | GO:GO:0031625 | GO:GO:0042787 | GO:GO:0043161 | InterPro:IPR000210 |
| RefSeq:NP_191182.1 | PFAM:PF00651 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0007103 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50097 | PANTHER:PTHR24413 | PANTHER:PTHR24413:SF164 | UniProt:Q9LYL9 |
| InterPro:SKP1/BTB/POZ_sf | SMART:SM00225 | SUPFAM:SSF54695 | UniParc:UPI00000A93B2 | SEG:seg | : |
Description
BTB/POZ domain-containing protein At3g56230 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYL9]
Coordinates
chr3:-:20860720..20862395
Molecular Weight (calculated)
31765.1 Da
IEP (calculated)
5.982
GRAVY (calculated)
-0.328
Length
282 amino acids
Sequence
(BLAST)
(BLAST)
001: MDCSICTTMP SILRPPRNTI CGSCYEGART TIALLKKLEG SKEDRHDKSN HNSTINNGSS ISSSPLFSCE PQPLEKVIKW MKNMKETEEE QKKRIVFLSS
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD
101: FVSGFKEQLH ADILLKPGDD GPPIPAHRAL LASKSEIFKN ILDSDGCKTA PEYAITLQEL NSEQLQALLE FLYTGTLASD KLEKNVYALF IAADKYMIHY
201: LQELCEQYML SSLDISSVLN VLDVSDLGSS KTLKEACVGF VVRNMDDVVF SDKYEPFSQK NQHLCVEITR AFLMETRSKR RD
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.