CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT4G04090.1	Thale cress	cytosol	57.41	64.58
CDY24905	Canola	cytosol	58.8	60.77
CDX97765	Canola	cytosol	32.87	60.17
CDY24906	Canola	cytosol	37.04	60.15
CDY07606	Canola	cytosol	57.87	59.81
CDX79987	Canola	cytosol	51.85	56.28
CDY23907	Canola	cytosol	50.93	55.0
CDY08283	Canola	cytosol	55.09	54.84
CDY07607	Canola	cytosol	52.78	50.67
CDY19060	Canola	mitochondrion	39.35	49.71
CDY23905	Canola	cytosol	45.83	49.01
CDY24907	Canola	cytosol	54.63	48.96
CDX79986	Canola	cytosol	43.06	47.45
CDY32004	Canola	cytosol	34.72	37.69
CDX90048	Canola	cytosol	32.87	33.97
CDY51160	Canola	cytosol	29.63	31.53
CDY07220	Canola	cytosol	29.17	31.19
CDY52933	Canola	cytosol	31.02	22.71
CDX72156	Canola	cytosol	29.63	22.61
CDY27231	Canola	cytosol	29.63	22.61
CDY34002	Canola	cytosol	7.41	22.54
GSMUA_Achr5P29570_001	Banana	cytosol	27.31	21.0
EES09114	Sorghum	cytosol	26.39	20.58
Os12t0111500-02	Rice	cytosol	25.93	20.36
Zm00001d036840_P001	Maize	cytosol	27.31	20.34
CDX83137	Canola	cytosol	24.54	19.85
HORVU4Hr1G022110.3	Barley	cytosol	25.93	19.65
Os11t0111900-01	Rice	cytosol	25.0	19.64
TraesCS4A01G196800.2	Wheat	cytosol	25.93	19.58
TraesCS4D01G116200.2	Wheat	cytosol	25.93	19.58
TraesCS4B01G118500.1	Wheat	cytosol	25.46	19.23
CDY34003	Canola	nucleus	12.96	16.18
CDX67639	Canola	cytosol	36.11	15.2
CDY32006	Canola	nucleus	15.74	14.72

Protein Annotations

EnsemblPlants:CDY31600	EnsemblPlantsGene:GSBRNA2T00050107001	Gene3D:1.25.40.420	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164
PFAM:PF00651	PFscan:PS50097	ProteinID:CDY31600	ProteinID:CDY31600.1	SMART:SM00225	SUPFAM:SSF54695
UniParc:UPI0004EE95D8	UniProt:A0A078GYS1	MapMan:35.1	:	:	:

Description

BnaA03g54520DBnaA03g54520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GYS1]

Coordinates

chrLK032275:+:77363..78203

Molecular Weight (calculated)

24343.5 Da

IEP (calculated)

7.718

GRAVY (calculated)

-0.091

Length

216 amino acids

Sequence
(BLAST)

001: MGTQTNKEHF FGGFLKILKQ QQVDVRLNAC DKKAAISAHK LILSARSEVF AKMFEEDKCK SSSRLEIITL SELKQEELEA FVEFIYGDGS ILSEKAKQHV
101: MSLYRAADKY EIPHLRDLCR MELISSLNAS NALKVLELSQ IPFDKALSDA AISVIKINKD EISSSTEFKV FVVDHPDLTV EIVKAMLEFA ATYYCTCGRF
201: VCCSYCGSRS KRKTTV

Best Arabidopsis Sequence Match ( AT4G04090.1 )
(BLAST)

001: MGTQTNKGFF YDEFLKVLKE QQVDVRLMAR DSEKDAAISA HKRILSARSE VFEEMFESDK YKASSKLETI TLSEMKHEVL EAFVDFTYSD GSMLSEKAKQ
101: HAMSLYSAAK DYEIPRLWCL CRKELIASLN MSNALRVLQL AQIPYDESLS VAAFTTIKNS KLKLSSSTKV KVFVVNHPNG PLEITRAIFP RN

Arabidopsis Description

Putative BTB/POZ domain-containing protein At4g04090 [Source:UniProtKB/Swiss-Prot;Acc:O81432]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.