CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY51160	Canola	cytosol	89.6	89.16
CDX90048	Canola	cytosol	47.03	45.45
CDY24906	Canola	cytosol	27.23	41.35
CDX97765	Canola	cytosol	23.76	40.68
CDX79986	Canola	cytosol	34.65	35.71
CDY07606	Canola	cytosol	35.15	33.97
CDY23905	Canola	cytosol	33.66	33.66
CDY23907	Canola	cytosol	33.17	33.5
CDY24905	Canola	cytosol	34.65	33.49
CDX79987	Canola	cytosol	32.18	32.66
CDY08283	Canola	cytosol	32.67	30.41
CDY07607	Canola	cytosol	32.67	29.33
CDY31600	Canola	cytosol	31.19	29.17
CDY24907	Canola	cytosol	34.65	29.05
CDY19060	Canola	mitochondrion	24.26	28.66
CDX72156	Canola	cytosol	39.6	28.27
CDY27231	Canola	cytosol	39.6	28.27
CDY32004	Canola	cytosol	26.24	26.63
GSMUA_Achr5P29570_001	Banana	cytosol	36.63	26.33
EES09114	Sorghum	cytosol	31.19	22.74
Os12t0111500-02	Rice	cytosol	30.2	22.18
Os11t0111900-01	Rice	cytosol	30.2	22.18
Zm00001d036840_P001	Maize	cytosol	31.19	21.72
TraesCS4A01G196800.2	Wheat	cytosol	30.69	21.68
TraesCS4B01G118500.1	Wheat	cytosol	30.69	21.68
TraesCS4D01G116200.2	Wheat	cytosol	30.69	21.68
HORVU4Hr1G022110.3	Barley	cytosol	30.2	21.4
CDY52933	Canola	cytosol	25.74	17.63
CDY32006	Canola	nucleus	19.31	16.88
CDX83137	Canola	cytosol	22.28	16.85
CDY34003	Canola	nucleus	14.36	16.76
CDY34002	Canola	cytosol	3.96	11.27
CDX67639	Canola	cytosol	27.23	10.72

Protein Annotations

EnsemblPlants:CDY07220	EnsemblPlantsGene:GSBRNA2T00123581001	Gene3D:3.30.710.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:BTB/POZ_dom	InterPro:IPR000210	InterPro:SKP1/BTB/POZ_sf	PANTHER:PTHR24413	PANTHER:PTHR24413:SF164	PFAM:PF00651
PFscan:PS50097	ProteinID:CDY07220	ProteinID:CDY07220.1	SMART:SM00225	SUPFAM:SSF54695	UniParc:UPI0004EC52F6
MapMan:35.1	:	:	:	:	:

Description

BnaCnng02350D

Coordinates

chrLK031975:+:888066..888758

Molecular Weight (calculated)

22821.7 Da

IEP (calculated)

7.556

GRAVY (calculated)

-0.054

Length

202 amino acids

Sequence
(BLAST)

001: MAESTKRKFE RVDFLSDHVM ALKEAIHADF ILKPGDNGPG IPTHKAVLAV KSKVFRSMLE TDECKVSPEK SITIHDLSYG ELESLLEFFY SGTLSRDNKH
101: VRALYLAADK YDIQYLQDIC REILISSLSS ENVLDIIQLS NIPSDAILKA AAIVFLLRRN IGMIFQKSFE TFALKDPSTT LEIFQACIRI LRALSRKPTQ
201: PN

Best Arabidopsis Sequence Match ( AT1G01640.1 )
(BLAST)

001: MTEAEQKAAF LGGLVVSFKE QMHTDVLVKP GEEAPPIPTH KAVLAARSKV FRNMLDSDEC KTSPEESITL PDLSHDELKS LLEFLYSGNL KAPYNQYRSL
101: YLAADKYDIS YLQDVCRNHF IASLSSRNVL DILELASIPC DTILKDAAIN HIVKHMEEVV VPMKYETFVQ RNPDLSVEIT RAYLRETKAK AKDHGAPLNG
201: NTRPRIW

Arabidopsis Description

BTB/POZ domain-containing protein At1g01640 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQ95]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.