Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 36.54 | 78.31 |
| VIT_13s0019g02260.t01 | Wine grape | cytosol | 69.88 | 69.7 |
| PGSC0003DMT400069942 | Potato | cytosol | 69.63 | 69.12 |
| Solyc05g052960.2.1 | Tomato | cytosol | 69.38 | 68.87 |
| TraesCS2A01G255800.1 | Wheat | cytosol | 67.16 | 68.69 |
| TraesCS2D01G266900.1 | Wheat | cytosol | 67.16 | 68.69 |
| Os07t0101400-01 | Rice | cytosol | 66.42 | 68.1 |
| Bra000147.1-P | Field mustard | cytosol | 61.98 | 65.71 |
| CDX93238 | Canola | cytosol | 63.46 | 64.9 |
| Bra017053.1-P | Field mustard | cytosol | 63.7 | 64.66 |
| CDY07031 | Canola | cytosol | 63.46 | 64.41 |
| CDY07638 | Canola | cytosol | 62.96 | 63.75 |
| EER97813 | Sorghum | plastid | 63.21 | 63.68 |
| KRH31032 | Soybean | nucleus | 64.44 | 62.89 |
| KRG97837 | Soybean | cytosol | 64.2 | 62.8 |
| HORVU2Hr1G064920.1 | Barley | plastid | 66.17 | 62.33 |
| AT2G39760.1 | Thale cress | cytosol | 62.72 | 62.25 |
| CDY61778 | Canola | cytosol | 62.72 | 60.19 |
| GSMUA_Achr6P16160_001 | Banana | plastid | 59.75 | 58.03 |
| GSMUA_Achr6P23740_001 | Banana | plastid | 58.52 | 56.97 |
| GSMUA_Achr5P08970_001 | Banana | cytosol | 55.56 | 55.97 |
| GSMUA_Achr7P27230_001 | Banana | cytosol | 54.07 | 55.73 |
| GSMUA_Achr4P14800_001 | Banana | cytosol | 53.33 | 54.96 |
| Zm00001d007888_P002 | Maize | plastid | 57.04 | 53.72 |
| CDX93236 | Canola | cytosol | 38.27 | 37.99 |
Protein Annotations
| Gene3D:1.25.40.420 | Gene3D:2.60.210.10 | Gene3D:3.30.710.10 | MapMan:35.1 | InterPro:BPM_C | InterPro:BTB/POZ_dom |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | EnsemblPlantsGene:GSMUA_Achr7G10650_001 | EnsemblPlants:GSMUA_Achr7P10650_001 | EnsemblPlants:GSMUA_Achr7T10650_001 |
| InterPro:IPR000210 | InterPro:IPR002083 | InterPro:IPR008974 | UniProt:M0TGF3 | InterPro:MATH/TRAF_dom | PFAM:PF00651 |
| PFscan:PS50097 | PFscan:PS50144 | PANTHER:PTHR24411 | PANTHER:PTHR24411:SF54 | InterPro:SKP1/BTB/POZ_sf | SMART:SM00061 |
| SMART:SM00225 | SUPFAM:SSF49599 | SUPFAM:SSF54695 | InterPro:TRAF-like | UniParc:UPI000296D461 | SEG:seg |
Description
Putative Speckle-type POZ protein-like A [Source:GMGC_GENE;Acc:GSMUA_Achr7G10650_001]
Coordinates
chr7:+:8538530..8545675
Molecular Weight (calculated)
44892.9 Da
IEP (calculated)
6.882
GRAVY (calculated)
-0.172
Length
405 amino acids
Sequence
(BLAST)
(BLAST)
001: MEKVVHGDRG GINVSQSKSV CETVNGSHRY TIQGFSLAKG MGLGKYMSSG TFDVGGYKWA IYFYPDGKNP EDNSLYVSVF IALASEGTDV RALFELTMLD
101: QSGKDRHKVH SHFERALEGG PYTLKYRGSM WGYKRFYRRT ALETSDYLKD DCLIMHCTVG VVRNRIETPT QFSVSVPSPD LGQCLKELLK SGIGSDIVFH
201: VGDETFKAHK RILAARSPVF NAQFYGLVGN PNVDRVDVED VEPPVFKAML IFIYSDELPD VHELTGSISM CTSTIMIQHL LAAADRYGLD RLRLLCEAKL
301: CEGITADTVA TTLALAEQHQ CVQLKNVCLK FIAVRENLGA VMQTEGYNYL EGTCPSVLAE LLETVAVVDN DAGQVCRKRS SSSNLGMNSM DSVDLNGGRR
401: LRRRM
101: QSGKDRHKVH SHFERALEGG PYTLKYRGSM WGYKRFYRRT ALETSDYLKD DCLIMHCTVG VVRNRIETPT QFSVSVPSPD LGQCLKELLK SGIGSDIVFH
201: VGDETFKAHK RILAARSPVF NAQFYGLVGN PNVDRVDVED VEPPVFKAML IFIYSDELPD VHELTGSISM CTSTIMIQHL LAAADRYGLD RLRLLCEAKL
301: CEGITADTVA TTLALAEQHQ CVQLKNVCLK FIAVRENLGA VMQTEGYNYL EGTCPSVLAE LLETVAVVDN DAGQVCRKRS SSSNLGMNSM DSVDLNGGRR
401: LRRRM
001: MSTVGGIEQL IPDSVSTSFI ETVNGSHQFT IQGYSLAKGM SPGKFIQSDI FSVGGYDWAI YFYPDGKNPE DQSSYISLFI ALASDSNDIR ALFELTLMDQ
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
101: SGKGKHKVHS HFDRALEGGP YTLKYKGSMW GYKRFFKRSA LETSDYLKDD CLVINCTVGV VRARLEGPKQ YGIVLPLSNM GQGLKDLLDS EVGCDIAFQV
201: GDETYKAHKL ILAARSPVFR AQFFGPIGNN NVDRIVIDDI EPSIFKAMLS FIYTDVLPNV HEITGSTSAS SFTNMIQHLL AAADLYDLAR LKILCEVLLC
301: EKLDVDNVAT TLALAEQHQF LQLKAFCLEF VASPANLGAV MKSEGFKHLK QSCPTLLSEL LNTVAAADKS STSGQSNKKR SASSVLGCDT TNVRQLRRRT
401: RKEVRAVS
Arabidopsis Description
BPM3BTB/POZ and MATH domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:O22286]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.