Factsheet for GSMUA_Achr11P12550_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P16130_001	Banana	cytosol	64.49	66.99
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	30.84	66.0
Zm00001d025361_P001	Maize	nucleus	56.07	54.05
TraesCS2D01G294500.1	Wheat	cytosol	57.01	53.04
TraesCS2B01G312800.1	Wheat	cytosol	57.01	53.04
TraesCS2A01G296600.1	Wheat	cytosol	57.01	53.04
KRH67976	Soybean	nucleus, plastid	53.27	52.29
TraesCS4B01G346800.1	Wheat	plastid	56.07	52.17
EES10769	Sorghum	mitochondrion	56.07	52.17
Os04t0415000-01	Rice	cytosol	56.07	51.72
KRG96232	Soybean	nucleus, plastid	52.34	51.38
KRH25293	Soybean	plastid	51.4	50.46
GSMUA_Achr6P19430_001	Banana	nucleus	50.47	46.55
KRH30377	Soybean	plastid	47.66	46.36
AT5G06270.1	Thale cress	mitochondrion, plastid	52.34	45.9
Bra005888.1-P	Field mustard	plastid	51.4	45.45
Zm00001d003763_P001	Maize	cytosol	55.14	45.04
GSMUA_Achr9P02640_001	Banana	cytosol	49.53	44.92
GSMUA_Achr10P...	Banana	cytosol	49.53	44.92
CDX80998	Canola	plastid	50.47	44.63
Solyc10g083140.1.1	Tomato	plastid	28.04	44.12
KRH22650	Soybean	cytosol, plastid	43.93	43.93
CDY64732	Canola	plastid	50.47	43.9
Bra009178.1-P	Field mustard	plastid	50.47	43.9
CDY47258	Canola	plastid	49.53	43.8
AT3G11600.1	Thale cress	plastid	47.66	43.59
Bra028737.1-P	Field mustard	plastid	48.6	42.98
Bra001413.1-P	Field mustard	plastid	47.66	42.86
CDX73863	Canola	plastid	47.66	42.86
GSMUA_Achr6P07030_001	Banana	cytosol, plastid	49.53	42.4
Bra038666.1-P	Field mustard	plastid	45.79	42.24
CDY14087	Canola	plastid	53.27	42.22
HORVU2Hr1G073380.7	Barley	cytosol, mitochondrion, nucleus, plastid	55.14	41.84
Bra034826.1-P	Field mustard	plastid	45.79	41.53
CDY08510	Canola	nucleus, plastid	45.79	41.53
PGSC0003DMT400072576	Potato	plastid	41.12	41.51
Os02t0536500-01	Rice	mitochondrion	47.66	41.46
KRH26665	Soybean	plastid	39.25	40.78
CDY01039	Canola	mitochondrion, nucleus	44.86	40.68
Solyc06g073990.1.1	Tomato	nucleus, plastid	43.93	39.5
PGSC0003DMT400015190	Potato	nucleus, plastid	44.86	39.02
Solyc01g007870.2.1	Tomato	nucleus	45.79	38.89
EES05192	Sorghum	nucleus, plastid	52.34	38.89
KRH22649	Soybean	cytosol	24.3	38.81
PGSC0003DMT400042213	Potato	cytosol	47.66	38.64
PGSC0003DMT400050486	Potato	cytosol, plastid	41.12	37.29
CDY04984	Canola	plastid	46.73	37.04
KRH26667	Soybean	nucleus, plastid	37.38	35.71
Zm00001d016743_P001	Maize	nucleus	48.6	34.67
KRH26666	Soybean	cytosol	34.58	32.74
KRH22648	Soybean	nucleus, plastid	33.64	29.75
VIT_08s0007g02600.t01	Wine grape	plastid	52.34	25.69
GSMUA_Achr6P12990_001	Banana	nucleus	48.6	25.49

Protein Annotations

EnsemblPlants:GSMUA_Achr11P12550_001	EnsemblPlants:GSMUA_Achr11T12550_001	EnsemblPlantsGene:GSMUA_Achr11G12550_001	PANTHER:PTHR33177	PANTHER:PTHR33177:SF3	SEG:seg
UniParc:UPI000296EB8C	UniProt:M0RRN5	MapMan:35.2	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr11G12550_001]

Coordinates

chr11:+:11553034..11553357

Molecular Weight (calculated)

11388.5 Da

IEP (calculated)

8.505

GRAVY (calculated)

-0.642

Length

107 amino acids

Sequence
(BLAST)

001: MSRRSGHGES QNLDLKLNLA LPSRGDTSRR MATTGGDDSP RGSSSPSSCL SSEADSPEGP SMVLAGCPRC LMYVMLPGDD PKCPKCKSAV LLDFLHDTTT
101: TKKSRKT

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.