Factsheet for TraesCS4B01G346800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G312800.1	Wheat	cytosol	99.13	99.13
TraesCS2D01G294500.1	Wheat	cytosol	96.52	96.52
TraesCS2A01G296600.1	Wheat	cytosol	96.52	96.52
Zm00001d025361_P001	Maize	nucleus	85.22	88.29
EES10769	Sorghum	mitochondrion	82.61	82.61
Os04t0415000-01	Rice	cytosol	81.74	81.03
Zm00001d003763_P001	Maize	cytosol	78.26	68.7
HORVU2Hr1G073380.7	Barley	cytosol, mitochondrion, nucleus, plastid	80.87	65.96
GSMUA_Achr11P...	Banana	nucleus	52.17	56.07
KRH67976	Soybean	nucleus, plastid	51.3	54.13
KRG96232	Soybean	nucleus, plastid	51.3	54.13
GSMUA_Achr8P16130_001	Banana	cytosol	46.96	52.43
AT5G06270.1	Thale cress	mitochondrion, plastid	51.3	48.36
CDY47258	Canola	plastid	49.57	47.11
Bra028737.1-P	Field mustard	plastid	49.57	47.11
CDY64732	Canola	plastid	49.57	46.34
Bra009178.1-P	Field mustard	plastid	49.57	46.34
Solyc10g083140.1.1	Tomato	plastid	26.96	45.59
CDX80998	Canola	plastid	47.83	45.45
Bra038666.1-P	Field mustard	plastid	45.22	44.83
Bra005888.1-P	Field mustard	plastid	46.96	44.63
AT3G11600.1	Thale cress	plastid	45.22	44.44
CDY14087	Canola	plastid	51.3	43.7
KRH25293	Soybean	plastid	40.87	43.12
KRH30377	Soybean	plastid	40.87	42.73
CDY04984	Canola	plastid	49.57	42.22
KRH22649	Soybean	cytosol	24.35	41.79
GSMUA_Achr9P02640_001	Banana	cytosol	41.74	40.68
CDY08510	Canola	nucleus, plastid	41.74	40.68
Bra034826.1-P	Field mustard	plastid	41.74	40.68
PGSC0003DMT400072576	Potato	plastid	37.39	40.57
GSMUA_Achr6P07030_001	Banana	cytosol, plastid	43.48	40.0
CDY01039	Canola	mitochondrion, nucleus	40.87	39.83
TraesCS2B01G400400.1	Wheat	cytosol	28.7	39.76
CDX73863	Canola	plastid	40.87	39.5
Bra001413.1-P	Field mustard	plastid	40.87	39.5
KRH22650	Soybean	cytosol, plastid	36.52	39.25
Solyc01g007870.2.1	Tomato	nucleus	41.74	38.1
PGSC0003DMT400015190	Potato	nucleus, plastid	40.0	37.4
PGSC0003DMT400042213	Potato	cytosol	42.61	37.12
KRH26665	Soybean	plastid	33.04	36.89
Solyc06g073990.1.1	Tomato	nucleus, plastid	37.39	36.13
TraesCS3B01G407900.1	Wheat	plastid	39.13	35.43
KRH26666	Soybean	cytosol	31.3	31.86
PGSC0003DMT400050486	Potato	cytosol, plastid	32.17	31.36
KRH26667	Soybean	nucleus, plastid	30.43	31.25
KRH22648	Soybean	nucleus, plastid	29.57	28.1
VIT_08s0007g02600.t01	Wine grape	plastid	52.17	27.52
TraesCS1B01G284900.1	Wheat	extracellular, plastid, vacuole	39.13	24.59
GSMUA_Achr6P12990_001	Banana	nucleus	42.61	24.02

Protein Annotations

EnsemblPlants:TraesCS4B01G346800.1

EnsemblPlantsGene:TraesCS4B01G346800

PANTHER:PTHR33177

PANTHER:PTHR33177:SF3

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr4B:+:640326256..640326603

Molecular Weight (calculated)

12700.8 Da

IEP (calculated)

8.498

GRAVY (calculated)

-0.816

Length

115 amino acids

Sequence
(BLAST)

001: MSRSNRKSSS KGLDLKLNLS LPARGYSSNR VMADEESSPS SCLSSENEHG LQWSNSPEAT SMVLAACPRC FIYVMLPQDD PRCPQCKSPV LLDFLQDNSN
101: NNNSTNSNSR KSRRG

Best Arabidopsis Sequence Match ( AT5G06270.2 )
(BLAST)

001: MSRRSPKLEL KLNLSPPTSS QRRMVRSPSR SATTSPTSPP SSCVSSEMNQ DEPSVRYSTS PETTSMVLVG CPRCLMYVML SEDDPKCPKC KSTVLLDFLH
101: ENATNANANA AAASSGRKTR RN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FNI1]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.