CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY08510	Canola	nucleus, plastid	96.61	96.61
Bra034826.1-P	Field mustard	plastid	94.92	94.92
CDX73863	Canola	plastid	75.42	74.79
AT3G11600.1	Thale cress	plastid	72.03	72.65
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	26.27	62.0
KRG96232	Soybean	nucleus, plastid	56.78	61.47
KRH67976	Soybean	nucleus, plastid	56.78	61.47
CDY47258	Canola	plastid	59.32	57.85
CDY64732	Canola	plastid	60.17	57.72
CDX80998	Canola	plastid	55.93	54.55
CDY14087	Canola	plastid	61.02	53.33
CDY04984	Canola	plastid	60.17	52.59
TraesCS7D01G324300.1	Wheat	cytosol	26.27	47.69
Solyc06g073990.1.1	Tomato	nucleus, plastid	47.46	47.06
GSMUA_Achr8P16130_001	Banana	cytosol	40.68	46.6
GSMUA_Achr11P...	Banana	nucleus	40.68	44.86
Os08t0102250-00	Rice	cytosol	25.42	44.12
TraesCS2D01G379500.1	Wheat	cytosol	30.51	43.9
Zm00001d001776_P001	Maize	cytosol, plastid	29.66	43.75
TraesCS2B01G400400.1	Wheat	cytosol	30.51	43.37
PGSC0003DMT400050486	Potato	cytosol, plastid	43.22	43.22
PGSC0003DMT400015190	Potato	nucleus, plastid	44.92	43.09
TraesCS2A01G383200.1	Wheat	cytosol	29.66	42.68
HORVU2Hr1G089140.1	Barley	cytosol	29.66	42.17
Os04t0684600-01	Rice	cytosol	28.81	41.98
GSMUA_Achr10P...	Banana	cytosol	41.53	41.53
TraesCS2D01G294500.1	Wheat	cytosol	39.83	40.87
TraesCS4B01G346800.1	Wheat	plastid	39.83	40.87
TraesCS2B01G312800.1	Wheat	cytosol	39.83	40.87
TraesCS2A01G296600.1	Wheat	cytosol	39.83	40.87
Zm00001d025361_P001	Maize	nucleus	38.14	40.54
Zm00001d038287_P001	Maize	mitochondrion	44.92	40.46
TraesCS1D01G275300.1	Wheat	nucleus	44.92	39.85
TraesCS1A01G275700.1	Wheat	plastid	44.92	39.55
EES11682	Sorghum	cytosol, plastid	31.36	39.36
GSMUA_Achr6P07030_001	Banana	cytosol, plastid	41.53	39.2
EES10769	Sorghum	mitochondrion	38.14	39.13
TraesCS2D01G597400.1	Wheat	cytosol, plastid	27.97	38.82
GSMUA_Achr6P19430_001	Banana	nucleus	38.14	38.79
Os04t0415000-01	Rice	cytosol	38.14	38.79
Os05t0442000-00	Rice	cytosol, mitochondrion, nucleus, plastid	43.22	38.64
TraesCS3D01G368200.1	Wheat	plastid	39.83	37.3
HORVU3Hr1G083720.1	Barley	plastid	39.83	37.3
GSMUA_Achr9P02640_001	Banana	cytosol	37.29	37.29
TraesCS3B01G407900.1	Wheat	plastid	39.83	37.01
TraesCS3A01G375700.1	Wheat	plastid	38.98	36.22
Zm00001d042754_P001	Maize	mitochondrion, plastid	37.29	35.77
Os01t0863500-01	Rice	plastid	38.98	35.66
Zm00001d003763_P001	Maize	cytosol	38.14	34.35
HORVU2Hr1G073380.7	Barley	cytosol, mitochondrion, nucleus, plastid	38.98	32.62
Os02t0536500-01	Rice	mitochondrion	33.9	32.52
HORVU1Hr1G074000.6	Barley	mitochondrion	43.22	31.48
OQU87905	Sorghum	mitochondrion, plastid	31.36	31.36
VIT_08s0007g02600.t01	Wine grape	plastid	57.63	31.19
Zm00001d016743_P001	Maize	nucleus	38.98	30.67
EES05192	Sorghum	nucleus, plastid	37.29	30.56
EES19598	Sorghum	cytosol, plastid	45.76	29.51
TraesCS1B01G284900.1	Wheat	extracellular, plastid, vacuole	44.92	28.96
GSMUA_Achr6P12990_001	Banana	nucleus	29.66	17.16

Protein Annotations

EnsemblPlants:CDY01039	EnsemblPlantsGene:GSBRNA2T00111072001	PANTHER:PTHR33177	PANTHER:PTHR33177:SF8	ProteinID:CDY01039	ProteinID:CDY01039.1
UniParc:UPI0004EC9C5B	MapMan:35.2	:	:	:	:

Description

BnaC05g41610D

Coordinates

chrLK031923:+:861861..862254

Molecular Weight (calculated)

13090.8 Da

IEP (calculated)

9.099

GRAVY (calculated)

-0.570

Length

118 amino acids

Sequence
(BLAST)

001: MRRRNRSGPK LELKLNLSPP PSQGEQMSMV RSPSRSNTAS PNSCVSSEPS QEEMEKPISM VLVGCPRCLM YVMLSQDEPK CPKCKSTVLL DFFHENASAD
101: TTAPAVTTKR NKSFITNI

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.