Factsheet for TraesCS3B01G407900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 3
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G083720.1	Barley	plastid	92.91	93.65
TraesCS3D01G368200.1	Wheat	plastid	91.34	92.06
TraesCS3A01G375700.1	Wheat	plastid	90.55	90.55
Os01t0863500-01	Rice	plastid	81.89	80.62
Zm00001d042754_P001	Maize	mitochondrion, plastid	72.44	74.8
OQU87905	Sorghum	mitochondrion, plastid	60.63	65.25
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	21.26	54.0
KRH67976	Soybean	nucleus, plastid	39.37	45.87
KRG96232	Soybean	nucleus, plastid	39.37	45.87
TraesCS2B01G400400.1	Wheat	cytosol	29.92	45.78
AT5G06270.1	Thale cress	mitochondrion, plastid	41.73	43.44
GSMUA_Achr10P...	Banana	cytosol	40.16	43.22
CDY64732	Canola	plastid	41.73	43.09
Bra009178.1-P	Field mustard	plastid	41.73	43.09
CDY47258	Canola	plastid	40.94	42.98
Bra028737.1-P	Field mustard	plastid	40.94	42.98
CDX80998	Canola	plastid	40.16	42.15
AT3G11600.1	Thale cress	plastid	38.58	41.88
KRH30377	Soybean	plastid	36.22	41.82
KRH22649	Soybean	cytosol	22.05	41.79
Bra034826.1-P	Field mustard	plastid	38.58	41.53
GSMUA_Achr6P19430_001	Banana	nucleus	37.8	41.38
Bra005888.1-P	Field mustard	plastid	39.37	41.32
Solyc10g083140.1.1	Tomato	plastid	22.05	41.18
TraesCS1B01G284900.1	Wheat	extracellular, plastid, vacuole	59.06	40.98
CDY08510	Canola	nucleus, plastid	37.8	40.68
Bra038666.1-P	Field mustard	plastid	37.01	40.52
CDY01039	Canola	mitochondrion, nucleus	37.01	39.83
Solyc01g007870.2.1	Tomato	nucleus	39.37	39.68
Bra001413.1-P	Field mustard	plastid	37.01	39.5
CDX73863	Canola	plastid	37.01	39.5
TraesCS4B01G346800.1	Wheat	plastid	35.43	39.13
TraesCS2B01G312800.1	Wheat	cytosol	35.43	39.13
PGSC0003DMT400072576	Potato	plastid	32.28	38.68
Solyc06g073990.1.1	Tomato	nucleus, plastid	36.22	38.66
KRH25293	Soybean	plastid	33.07	38.53
CDY14087	Canola	plastid	40.94	38.52
CDY04984	Canola	plastid	40.16	37.78
PGSC0003DMT400050486	Potato	cytosol, plastid	34.65	37.29
PGSC0003DMT400042213	Potato	cytosol	37.8	36.36
PGSC0003DMT400015190	Potato	nucleus, plastid	34.65	35.77
KRH22650	Soybean	cytosol, plastid	29.92	35.51
KRH22648	Soybean	nucleus, plastid	31.5	33.06
KRH26667	Soybean	nucleus, plastid	27.56	31.25
KRH26665	Soybean	plastid	24.41	30.1
KRH26666	Soybean	cytosol	25.2	28.32
VIT_08s0007g02600.t01	Wine grape	plastid	37.01	21.56

Protein Annotations

EnsemblPlants:TraesCS3B01G407900.1

EnsemblPlantsGene:TraesCS3B01G407900

PANTHER:PTHR33177

PANTHER:PTHR33177:SF9

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr3B:+:643266207..643266590

Molecular Weight (calculated)

13141.5 Da

IEP (calculated)

11.479

GRAVY (calculated)

-0.591

Length

127 amino acids

Sequence
(BLAST)

001: MSRNGGKVSK LESLRLSLSR ARGGGGGQSS TTTTARPGGG GGVNGAISTS PRRLSSSSSS TASPPSSCVS SEGSPDAAAG APMVLAGCPR CMMYVMLSRE
101: DPRCPRCHSA VLLDFNDDQQ RRPRQRR

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.