Factsheet for TraesCS1B01G284900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, extracellular, vacuole

Predictor Summary:

plastid 2
extracellular 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plastid, vacuole
Any Predictor:	extracellular, plastid, vacuole
iPSORT:	plastid
MultiLoc:	extracellular
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	vacuole

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G275300.1	Wheat	nucleus	67.76	93.23
TraesCS1A01G275700.1	Wheat	plastid	64.48	88.06
HORVU1Hr1G074000.6	Barley	mitochondrion	59.56	67.28
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	16.39	60.0
TraesCS3B01G407900.1	Wheat	plastid	40.98	59.06
KRG96232	Soybean	nucleus, plastid	30.6	51.38
KRH67976	Soybean	nucleus, plastid	30.6	51.38
Bra034826.1-P	Field mustard	plastid	30.05	46.61
GSMUA_Achr6P19430_001	Banana	nucleus	29.51	46.55
CDY08510	Canola	nucleus, plastid	29.51	45.76
Bra038666.1-P	Field mustard	plastid	28.96	45.69
Solyc10g083140.1.1	Tomato	plastid	16.94	45.59
KRH30377	Soybean	plastid	27.32	45.45
CDY01039	Canola	mitochondrion, nucleus	28.96	44.92
AT3G11600.1	Thale cress	plastid	28.42	44.44
KRH25293	Soybean	plastid	26.23	44.04
CDX73863	Canola	plastid	28.42	43.7
Bra001413.1-P	Field mustard	plastid	28.42	43.7
GSMUA_Achr10P...	Banana	cytosol	27.87	43.22
CDY64732	Canola	plastid	28.96	43.09
Bra009178.1-P	Field mustard	plastid	28.96	43.09
KRH22650	Soybean	cytosol, plastid	25.14	42.99
CDY47258	Canola	plastid	28.42	42.98
CDX80998	Canola	plastid	28.42	42.98
AT5G06270.1	Thale cress	mitochondrion, plastid	28.42	42.62
Bra028737.1-P	Field mustard	plastid	27.87	42.15
Bra005888.1-P	Field mustard	plastid	27.87	42.15
Solyc06g073990.1.1	Tomato	nucleus, plastid	27.32	42.02
KRH22649	Soybean	cytosol	15.3	41.79
PGSC0003DMT400050486	Potato	cytosol, plastid	26.78	41.53
PGSC0003DMT400072576	Potato	plastid	24.04	41.51
CDY14087	Canola	plastid	30.05	40.74
Solyc01g007870.2.1	Tomato	nucleus	27.87	40.48
PGSC0003DMT400015190	Potato	nucleus, plastid	26.78	39.84
TraesCS2B01G400400.1	Wheat	cytosol	18.03	39.76
TraesCS2B01G312800.1	Wheat	cytosol	24.59	39.13
TraesCS4B01G346800.1	Wheat	plastid	24.59	39.13
CDY04984	Canola	plastid	27.32	37.04
PGSC0003DMT400042213	Potato	cytosol	26.23	36.36
KRH22648	Soybean	nucleus, plastid	24.04	36.36
KRH26665	Soybean	plastid	20.22	35.92
KRH26667	Soybean	nucleus, plastid	21.86	35.71
KRH26666	Soybean	cytosol	21.86	35.4
VIT_08s0007g02600.t01	Wine grape	plastid	31.15	26.15

Protein Annotations

EnsemblPlants:TraesCS1B01G284900.1

EnsemblPlantsGene:TraesCS1B01G284900

PANTHER:PTHR33177

PANTHER:PTHR33177:SF10

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr1B:+:495094598..495095305

Molecular Weight (calculated)

18825.6 Da

IEP (calculated)

10.425

GRAVY (calculated)

-0.345

Length

183 amino acids

Sequence
(BLAST)

001: MQVPFQALAS KPPYLHLHLH PTLGWFRVHV PCHSWVASTY SKVVLCGVSL KMSRNNGKGP KLDLRLSFSR SRGGGGGGGG GPSAAPPGGS NSPRRMSSSS
101: SSSASPPSSC VSSEGSPEAG GGSGGSAMIL AGCPRCMMYV MLSREDPKCP KCHSTVLLDF NDVGADHRNP GFGSGKVGKG KRG

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.