Factsheet for TraesCS1A01G275700.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G275300.1	Wheat	nucleus	89.55	90.23
HORVU1Hr1G074000.6	Barley	mitochondrion	85.07	70.37
TraesCS1B01G284900.1	Wheat	extracellular, plastid, vacuole	88.06	64.48
TraesCS3A01G375700.1	Wheat	plastid	58.21	61.42
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	22.39	60.0
KRH67976	Soybean	nucleus, plastid	41.79	51.38
KRG96232	Soybean	nucleus, plastid	41.79	51.38
KRH30377	Soybean	plastid	38.81	47.27
Bra034826.1-P	Field mustard	plastid	41.04	46.61
GSMUA_Achr6P19430_001	Banana	nucleus	40.3	46.55
CDY08510	Canola	nucleus, plastid	40.3	45.76
Bra038666.1-P	Field mustard	plastid	39.55	45.69
Solyc10g083140.1.1	Tomato	plastid	23.13	45.59
KRH25293	Soybean	plastid	36.57	44.95
CDY01039	Canola	mitochondrion, nucleus	39.55	44.92
AT3G11600.1	Thale cress	plastid	38.81	44.44
CDY64732	Canola	plastid	40.3	43.9
Bra009178.1-P	Field mustard	plastid	40.3	43.9
Bra001413.1-P	Field mustard	plastid	38.81	43.7
CDX73863	Canola	plastid	38.81	43.7
GSMUA_Achr10P...	Banana	cytosol	38.06	43.22
KRH22650	Soybean	cytosol, plastid	34.33	42.99
CDY47258	Canola	plastid	38.81	42.98
Bra028737.1-P	Field mustard	plastid	38.81	42.98
CDX80998	Canola	plastid	38.81	42.98
AT5G06270.1	Thale cress	mitochondrion, plastid	38.81	42.62
Bra005888.1-P	Field mustard	plastid	38.06	42.15
Solyc06g073990.1.1	Tomato	nucleus, plastid	37.31	42.02
KRH22649	Soybean	cytosol	20.9	41.79
PGSC0003DMT400072576	Potato	plastid	32.84	41.51
Solyc01g007870.2.1	Tomato	nucleus	38.81	41.27
PGSC0003DMT400050486	Potato	cytosol, plastid	35.82	40.68
TraesCS2A01G383200.1	Wheat	cytosol	24.63	40.24
TraesCS2A01G296600.1	Wheat	cytosol	34.33	40.0
PGSC0003DMT400015190	Potato	nucleus, plastid	36.57	39.84
CDY14087	Canola	plastid	38.81	38.52
KRH22648	Soybean	nucleus, plastid	33.58	37.19
PGSC0003DMT400042213	Potato	cytosol	36.57	37.12
CDY04984	Canola	plastid	37.31	37.04
KRH26666	Soybean	cytosol	30.6	36.28
KRH26665	Soybean	plastid	27.61	35.92
KRH26667	Soybean	nucleus, plastid	29.85	35.71
VIT_08s0007g02600.t01	Wine grape	plastid	40.3	24.77

Protein Annotations

EnsemblPlants:TraesCS1A01G275700.1

EnsemblPlantsGene:TraesCS1A01G275700

PANTHER:PTHR33177

PANTHER:PTHR33177:SF10

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr1A:+:470300495..470300899

Molecular Weight (calculated)

13180.5 Da

IEP (calculated)

10.480

GRAVY (calculated)

-0.599

Length

134 amino acids

Sequence
(BLAST)

001: MSRNNGKGPK LDLRLSFSRS RGGGGGGGGG GGPSAAPPGG SNSPRRMSSS SSSSASPPSS CVSSEGSPEA GGGSGGSAMI LAGCPRCMMY VMLSREDPKC
101: PKCQSTVLLD FNDVGADHRN PGFGSGKVGK GKRG

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.