Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 2
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g007870.2.1 | Tomato | nucleus | 84.09 | 88.1 |
| PGSC0003DMT400072576 | Potato | plastid | 50.76 | 63.21 |
| GSMUA_Achr8P07800_001 | Banana | cytosol, extracellular | 20.45 | 54.0 |
| GSMUA_Achr11P... | Banana | nucleus | 38.64 | 47.66 |
| GSMUA_Achr8P16130_001 | Banana | cytosol | 36.36 | 46.6 |
| PGSC0003DMT400015190 | Potato | nucleus, plastid | 41.67 | 44.72 |
| TraesCS7D01G324300.1 | Wheat | cytosol | 21.97 | 44.62 |
| GSMUA_Achr10P... | Banana | cytosol | 38.64 | 43.22 |
| Os08t0102250-00 | Rice | cytosol | 21.97 | 42.65 |
| EES10769 | Sorghum | mitochondrion | 37.12 | 42.61 |
| TraesCS4B01G346800.1 | Wheat | plastid | 37.12 | 42.61 |
| TraesCS2D01G294500.1 | Wheat | cytosol | 37.12 | 42.61 |
| TraesCS2B01G312800.1 | Wheat | cytosol | 37.12 | 42.61 |
| TraesCS2A01G296600.1 | Wheat | cytosol | 37.12 | 42.61 |
| Zm00001d025361_P001 | Maize | nucleus | 35.61 | 42.34 |
| PGSC0003DMT400050486 | Potato | cytosol, plastid | 36.36 | 40.68 |
| TraesCS2D01G379500.1 | Wheat | cytosol | 25.0 | 40.24 |
| TraesCS2A01G383200.1 | Wheat | cytosol | 25.0 | 40.24 |
| Zm00001d001776_P001 | Maize | cytosol, plastid | 24.24 | 40.0 |
| Os02t0536500-01 | Rice | mitochondrion | 37.12 | 39.84 |
| HORVU2Hr1G089140.1 | Barley | cytosol | 25.0 | 39.76 |
| TraesCS2B01G400400.1 | Wheat | cytosol | 25.0 | 39.76 |
| Os04t0415000-01 | Rice | cytosol | 34.85 | 39.66 |
| Os04t0684600-01 | Rice | cytosol | 24.24 | 39.51 |
| GSMUA_Achr6P07030_001 | Banana | cytosol, plastid | 37.12 | 39.2 |
| Zm00001d038287_P001 | Maize | mitochondrion | 38.64 | 38.93 |
| GSMUA_Achr6P19430_001 | Banana | nucleus | 34.09 | 38.79 |
| Os01t0863500-01 | Rice | plastid | 37.88 | 38.76 |
| Zm00001d042754_P001 | Maize | mitochondrion, plastid | 35.61 | 38.21 |
| HORVU3Hr1G083720.1 | Barley | plastid | 36.36 | 38.1 |
| TraesCS3D01G368200.1 | Wheat | plastid | 36.36 | 38.1 |
| TraesCS3B01G407900.1 | Wheat | plastid | 36.36 | 37.8 |
| EES11682 | Sorghum | cytosol, plastid | 26.52 | 37.23 |
| TraesCS3A01G375700.1 | Wheat | plastid | 35.61 | 37.01 |
| TraesCS1A01G275700.1 | Wheat | plastid | 37.12 | 36.57 |
| OQU87905 | Sorghum | mitochondrion, plastid | 32.58 | 36.44 |
| EES05192 | Sorghum | nucleus, plastid | 39.39 | 36.11 |
| TraesCS1D01G275300.1 | Wheat | nucleus | 36.36 | 36.09 |
| Zm00001d003763_P001 | Maize | cytosol | 35.61 | 35.88 |
| Os05t0442000-00 | Rice | cytosol, mitochondrion, nucleus, plastid | 35.61 | 35.61 |
| TraesCS2D01G597400.1 | Wheat | cytosol, plastid | 22.73 | 35.29 |
| GSMUA_Achr9P02640_001 | Banana | cytosol | 31.06 | 34.75 |
| HORVU2Hr1G073380.7 | Barley | cytosol, mitochondrion, nucleus, plastid | 36.36 | 34.04 |
| Zm00001d016743_P001 | Maize | nucleus | 37.12 | 32.67 |
| HORVU1Hr1G074000.6 | Barley | mitochondrion | 35.61 | 29.01 |
| EES19598 | Sorghum | cytosol, plastid | 37.12 | 26.78 |
| TraesCS1B01G284900.1 | Wheat | extracellular, plastid, vacuole | 36.36 | 26.23 |
| GSMUA_Achr6P12990_001 | Banana | nucleus | 30.3 | 19.61 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400042213 | EnsemblPlantsGene:PGSC0003DMG400016381 | PANTHER:PTHR33177 | PANTHER:PTHR33177:SF8 | PGSC:PGSC0003DMG400016381 | SEG:seg |
| UniParc:UPI0002961EBB | UniProt:M1BCN8 | MapMan:35.2 | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400016381]
Coordinates
chr1:-:3453531..3454550
Molecular Weight (calculated)
15043.8 Da
IEP (calculated)
8.314
GRAVY (calculated)
-0.908
Length
132 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRRNGNGPK LDLKLNLSPP RVVNHHNQHQ HQHQHQYQYE HHIDQQELLS PNRSLTTSPT SSCVSSEDSP SHQRHGPNSP ETTTSMVLVG CPRCLMYVML
101: AEVDPRCPKC KSTCLLDVIH ESNNCTTRRR IT
101: AEVDPRCPKC KSTCLLDVIH ESNNCTTRRR IT
001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN
101: TTATAANTRR KKKTWWN
Arabidopsis Description
E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.