Factsheet for Zm00001d042754_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, mitochondrion

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU87905	Sorghum	mitochondrion, plastid	76.42	79.66
TraesCS3D01G368200.1	Wheat	plastid	75.61	73.81
Os01t0863500-01	Rice	plastid	76.42	72.87
TraesCS3B01G407900.1	Wheat	plastid	74.8	72.44
HORVU3Hr1G083720.1	Barley	plastid	73.98	72.22
TraesCS3A01G375700.1	Wheat	plastid	73.17	70.87
Zm00001d038287_P001	Maize	mitochondrion	60.98	57.25
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	21.14	52.0
KRH67976	Soybean	nucleus, plastid	40.65	45.87
KRG96232	Soybean	nucleus, plastid	40.65	45.87
Zm00001d001776_P001	Maize	cytosol, plastid	28.46	43.75
GSMUA_Achr10P...	Banana	cytosol	41.46	43.22
AT5G06270.1	Thale cress	mitochondrion, plastid	41.46	41.8
KRH30377	Soybean	plastid	36.59	40.91
CDY64732	Canola	plastid	40.65	40.65
Bra009178.1-P	Field mustard	plastid	40.65	40.65
CDY47258	Canola	plastid	39.84	40.5
Bra028737.1-P	Field mustard	plastid	39.84	40.5
CDX80998	Canola	plastid	39.84	40.5
Solyc10g083140.1.1	Tomato	plastid	21.95	39.71
GSMUA_Achr6P19430_001	Banana	nucleus	37.4	39.66
AT3G11600.1	Thale cress	plastid	37.4	39.32
Bra034826.1-P	Field mustard	plastid	37.4	38.98
Solyc01g007870.2.1	Tomato	nucleus	39.84	38.89
Bra005888.1-P	Field mustard	plastid	38.21	38.84
KRH22649	Soybean	cytosol	21.14	38.81
KRH25293	Soybean	plastid	34.15	38.53
CDY08510	Canola	nucleus, plastid	36.59	38.14
Bra038666.1-P	Field mustard	plastid	35.77	37.93
Zm00001d025361_P001	Maize	nucleus	34.15	37.84
PGSC0003DMT400072576	Potato	plastid	32.52	37.74
CDY01039	Canola	mitochondrion, nucleus	35.77	37.29
Solyc06g073990.1.1	Tomato	nucleus, plastid	35.77	36.97
PGSC0003DMT400050486	Potato	cytosol, plastid	34.96	36.44
CDY14087	Canola	plastid	39.84	36.3
CDX73863	Canola	plastid	34.96	36.13
Bra001413.1-P	Field mustard	plastid	34.96	36.13
PGSC0003DMT400042213	Potato	cytosol	38.21	35.61
CDY04984	Canola	plastid	39.02	35.56
KRH22650	Soybean	cytosol, plastid	30.08	34.58
PGSC0003DMT400015190	Potato	nucleus, plastid	34.15	34.15
Zm00001d003763_P001	Maize	cytosol	34.15	32.06
Zm00001d016743_P001	Maize	nucleus	39.02	32.0
KRH22648	Soybean	nucleus, plastid	30.89	31.41
KRH26667	Soybean	nucleus, plastid	27.64	30.36
KRH26666	Soybean	cytosol	26.83	29.2
KRH26665	Soybean	plastid	23.58	28.16
VIT_08s0007g02600.t01	Wine grape	plastid	38.21	21.56

Protein Annotations

EnsemblPlants:Zm00001d042754_P001	EnsemblPlants:Zm00001d042754_T001	EnsemblPlantsGene:Zm00001d042754	EntrezGene:100277613	PANTHER:PTHR33177	PANTHER:PTHR33177:SF9
ProteinID:ONM36223.1	SEG:seg	UniParc:UPI000221FDC1	UniProt:A0A1D6N6J9	MapMan:35.2	:

Description

No Description!

Coordinates

chr3:-:178933958..178934329

Molecular Weight (calculated)

12907.3 Da

IEP (calculated)

11.457

GRAVY (calculated)

-0.660

Length

123 amino acids

Sequence
(BLAST)

001: MSRNNGKASK LELLRMGLSR ARGGPSATAR PGGDSGSNGR ATTSPRRVSS SSSSTASPPS SCVSSEGSPD AAAAAPAPMV LAGCPRCMMY VMLSREDPRC
101: PRCHNAVLLD FSEGDQRRPR QRR

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.