CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

nucleus 1
plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d042754_P001	Maize	mitochondrion, plastid	79.66	76.42
Os01t0863500-01	Rice	plastid	69.49	63.57
TraesCS3D01G368200.1	Wheat	plastid	66.1	61.9
TraesCS3B01G407900.1	Wheat	plastid	65.25	60.63
HORVU3Hr1G083720.1	Barley	plastid	64.41	60.32
TraesCS3A01G375700.1	Wheat	plastid	64.41	59.84
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	22.03	52.0
KRG96232	Soybean	nucleus, plastid	34.75	37.61
KRH67976	Soybean	nucleus, plastid	34.75	37.61
GSMUA_Achr10P...	Banana	cytosol	37.29	37.29
Solyc10g083140.1.1	Tomato	plastid	21.19	36.76
Bra028737.1-P	Field mustard	plastid	37.29	36.36
AT5G06270.1	Thale cress	mitochondrion, plastid	37.29	36.07
PGSC0003DMT400072576	Potato	plastid	32.2	35.85
EES10769	Sorghum	mitochondrion	34.75	35.65
CDY47258	Canola	plastid	36.44	35.54
CDX80998	Canola	plastid	36.44	35.54
KRH30377	Soybean	plastid	33.05	35.45
GSMUA_Achr6P19430_001	Banana	nucleus	34.75	35.34
Solyc06g073990.1.1	Tomato	nucleus, plastid	35.59	35.29
CDY64732	Canola	plastid	36.44	34.96
Bra009178.1-P	Field mustard	plastid	36.44	34.96
Solyc01g007870.2.1	Tomato	nucleus	37.29	34.92
Bra005888.1-P	Field mustard	plastid	35.59	34.71
EES19598	Sorghum	cytosol, plastid	53.39	34.43
KRH22649	Soybean	cytosol	19.49	34.33
AT3G11600.1	Thale cress	plastid	33.9	34.19
EES11682	Sorghum	cytosol, plastid	27.12	34.04
PGSC0003DMT400015190	Potato	nucleus, plastid	34.75	33.33
Bra034826.1-P	Field mustard	plastid	33.05	33.05
Bra038666.1-P	Field mustard	plastid	32.2	32.76
CDY14087	Canola	plastid	37.29	32.59
PGSC0003DMT400042213	Potato	cytosol	36.44	32.58
CDY08510	Canola	nucleus, plastid	32.2	32.2
CDY04984	Canola	plastid	36.44	31.85
CDY01039	Canola	mitochondrion, nucleus	31.36	31.36
CDX73863	Canola	plastid	31.36	31.09
Bra001413.1-P	Field mustard	plastid	31.36	31.09
KRH25293	Soybean	plastid	27.97	30.28
EES05192	Sorghum	nucleus, plastid	36.44	29.86
KRH22650	Soybean	cytosol, plastid	26.27	28.97
PGSC0003DMT400050486	Potato	cytosol, plastid	28.81	28.81
KRH26667	Soybean	nucleus, plastid	27.12	28.57
KRH26666	Soybean	cytosol	27.12	28.32
KRH22648	Soybean	nucleus, plastid	27.97	27.27
KRH26665	Soybean	plastid	23.73	27.18
VIT_08s0007g02600.t01	Wine grape	plastid	33.05	17.89

Protein Annotations

EnsemblPlants:OQU87905	EnsemblPlantsGene:SORBI_3003G365800	PANTHER:PTHR33177	PANTHER:PTHR33177:SF9	ProteinID:OQU87905	ProteinID:OQU87905.1
SEG:seg	UniParc:UPI0009DC8641	UniProt:A0A1W0W0M6	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr3:+:68220405..68221944

Molecular Weight (calculated)

12419.8 Da

IEP (calculated)

11.713

GRAVY (calculated)

-0.675

Length

118 amino acids

Sequence
(BLAST)

001: MSRNNGKASK LEFLRMGLSR ARGGPSTTAR PGGESGNAGS TTSPRRVSSS SSSTASPPSS PDAPVVAGGG AAPMVLAGCP RCMMYVMLSR EDPRCPRCHN
101: AVLLDFNDGD QRRPRQRR

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.