CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1
cytosol 2
plastid 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, plastid, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	plasma membrane, plastid
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d001776_P001	Maize	cytosol, plastid	63.83	75.0
TraesCS7D01G324300.1	Wheat	cytosol	47.87	69.23
Os04t0684600-01	Rice	cytosol	54.26	62.96
TraesCS2D01G379500.1	Wheat	cytosol	48.94	56.1
TraesCS2A01G383200.1	Wheat	cytosol	48.94	56.1
TraesCS2B01G400400.1	Wheat	cytosol	48.94	55.42
HORVU2Hr1G089140.1	Barley	cytosol	48.94	55.42
Os08t0102250-00	Rice	cytosol	37.23	51.47
TraesCS2D01G597400.1	Wheat	cytosol, plastid	42.55	47.06
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	24.47	46.0
Solyc10g083140.1.1	Tomato	plastid	29.79	41.18
KRH67976	Soybean	nucleus, plastid	43.62	37.61
KRG96232	Soybean	nucleus, plastid	43.62	37.61
KRH30377	Soybean	plastid	42.55	36.36
KRH22649	Soybean	cytosol	25.53	35.82
GSMUA_Achr6P19430_001	Banana	nucleus	43.62	35.34
KRH22650	Soybean	cytosol, plastid	39.36	34.58
AT3G11600.1	Thale cress	plastid	42.55	34.19
KRH25293	Soybean	plastid	39.36	33.95
GSMUA_Achr10P...	Banana	cytosol	42.55	33.9
Bra038666.1-P	Field mustard	plastid	41.49	33.62
AT5G06270.1	Thale cress	mitochondrion, plastid	42.55	32.79
Bra005888.1-P	Field mustard	plastid	41.49	32.23
CDY47258	Canola	plastid	41.49	32.23
CDX80998	Canola	plastid	41.49	32.23
Bra034826.1-P	Field mustard	plastid	40.43	32.2
CDY08510	Canola	nucleus, plastid	40.43	32.2
Bra001413.1-P	Field mustard	plastid	40.43	31.93
CDX73863	Canola	plastid	40.43	31.93
CDY01039	Canola	mitochondrion, nucleus	39.36	31.36
EES10769	Sorghum	mitochondrion	38.3	31.3
PGSC0003DMT400072576	Potato	plastid	35.11	31.13
KRH26665	Soybean	plastid	34.04	31.07
CDY64732	Canola	plastid	40.43	30.89
Bra009178.1-P	Field mustard	plastid	40.43	30.89
Bra028737.1-P	Field mustard	plastid	39.36	30.58
Solyc06g073990.1.1	Tomato	nucleus, plastid	37.23	29.41
CDY14087	Canola	plastid	41.49	28.89
KRH26667	Soybean	nucleus, plastid	34.04	28.57
EES05192	Sorghum	nucleus, plastid	43.62	28.47
PGSC0003DMT400015190	Potato	nucleus, plastid	37.23	28.46
KRH26666	Soybean	cytosol	32.98	27.43
CDY04984	Canola	plastid	39.36	27.41
OQU87905	Sorghum	mitochondrion, plastid	34.04	27.12
Solyc01g007870.2.1	Tomato	nucleus	36.17	26.98
PGSC0003DMT400042213	Potato	cytosol	37.23	26.52
KRH22648	Soybean	nucleus, plastid	34.04	26.45
PGSC0003DMT400050486	Potato	cytosol, plastid	31.91	25.42
EES19598	Sorghum	cytosol, plastid	39.36	20.22
VIT_08s0007g02600.t01	Wine grape	plastid	39.36	16.97

Protein Annotations

EnsemblPlants:EES11682	EnsemblPlantsGene:SORBI_3006G273600	PANTHER:PTHR33177	PANTHER:PTHR33177:SF20	ProteinID:EES11682	ProteinID:EES11682.1
RefSeq:XP_002447354.1	SEG:seg	UniParc:UPI0001A87076	UniProt:C5YAP6	MapMan:35.2	:

Description

hypothetical protein

Coordinates

chr6:+:60515033..60516128

Molecular Weight (calculated)

9828.9 Da

IEP (calculated)

5.794

GRAVY (calculated)

-0.304

Length

94 amino acids

Sequence
(BLAST)

1: MSEQGKRPTM AGGGSAAESP ASSCVSSDAE DEVVVQPQPK PMVVVGCPQC LMYVMLSGEE QQPKCPRCKS PVLLHFLRAG DDINGGKLPA AGRQ

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.