CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid

Predictor Summary:

nucleus 2
plastid 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d038287_P001	Maize	mitochondrion	58.47	81.68
Os05t0442000-00	Rice	cytosol, mitochondrion, nucleus, plastid	48.09	66.67
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	16.94	62.0
OQU87905	Sorghum	mitochondrion, plastid	34.43	53.39
KRG96232	Soybean	nucleus, plastid	29.51	49.54
KRH67976	Soybean	nucleus, plastid	29.51	49.54
Bra034826.1-P	Field mustard	plastid	30.6	47.46
Bra038666.1-P	Field mustard	plastid	30.05	47.41
KRH30377	Soybean	plastid	28.42	47.27
AT3G11600.1	Thale cress	plastid	30.05	47.01
CDY08510	Canola	nucleus, plastid	30.05	46.61
CDY01039	Canola	mitochondrion, nucleus	29.51	45.76
Solyc10g083140.1.1	Tomato	plastid	16.94	45.59
Bra001413.1-P	Field mustard	plastid	29.51	45.38
CDX73863	Canola	plastid	29.51	45.38
AT5G06270.1	Thale cress	mitochondrion, plastid	29.51	44.26
CDY47258	Canola	plastid	28.96	43.8
CDX80998	Canola	plastid	28.96	43.8
Bra028737.1-P	Field mustard	plastid	28.96	43.8
KRH25293	Soybean	plastid	25.68	43.12
Bra009178.1-P	Field mustard	plastid	28.96	43.09
CDY64732	Canola	plastid	28.96	43.09
PGSC0003DMT400072576	Potato	plastid	24.59	42.45
PGSC0003DMT400050486	Potato	cytosol, plastid	27.32	42.37
Bra005888.1-P	Field mustard	plastid	27.87	42.15
KRH22649	Soybean	cytosol	15.3	41.79
EES10769	Sorghum	mitochondrion	26.23	41.74
GSMUA_Achr10P...	Banana	cytosol	26.78	41.53
CDY14087	Canola	plastid	30.6	41.48
GSMUA_Achr6P19430_001	Banana	nucleus	25.68	40.52
KRH22650	Soybean	cytosol, plastid	23.5	40.19
Solyc01g007870.2.1	Tomato	nucleus	27.32	39.68
Solyc06g073990.1.1	Tomato	nucleus, plastid	25.68	39.5
EES11682	Sorghum	cytosol, plastid	20.22	39.36
CDY04984	Canola	plastid	28.42	38.52
KRH22648	Soybean	nucleus, plastid	24.59	37.19
PGSC0003DMT400042213	Potato	cytosol	26.78	37.12
PGSC0003DMT400015190	Potato	nucleus, plastid	24.59	36.59
EES05192	Sorghum	nucleus, plastid	28.42	36.11
KRH26666	Soybean	cytosol	20.77	33.63
KRH26667	Soybean	nucleus, plastid	20.22	33.04
KRH26665	Soybean	plastid	18.03	32.04
VIT_08s0007g02600.t01	Wine grape	plastid	31.15	26.15

Protein Annotations

EnsemblPlants:EES19598	EnsemblPlantsGene:SORBI_3009G154100	PANTHER:PTHR33177	PANTHER:PTHR33177:SF10	ProteinID:EES19598	ProteinID:EES19598.2
SEG:seg	UniParc:UPI00081AD919	UniProt:C5YYQ3	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr9:+:51059870..51061171

Molecular Weight (calculated)

19058.3 Da

IEP (calculated)

10.838

GRAVY (calculated)

-0.673

Length

183 amino acids

Sequence
(BLAST)

001: MQTGVAPPHH KYPGRHTTIE VAWVPFHSSS STSNHQYTRA VASVRQCWKM SRNNGKVGSK LQELRLSLSR SSSSSRGGAA GGSSGATTHN HGGGGGRGSP
101: RRLSSSSSST ASPPSSCVSS EGSPEAGAAG APMILAGCPR CMMYVMLSRE DPRCPKCHST VLLDFNDAPN DPRHAKGKGG KRG

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.