Factsheet for PGSC0003DMT400050486

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

nucleus 3
plastid 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	25.42	60.0
KRH67976	Soybean	nucleus, plastid	46.61	50.46
KRG96232	Soybean	nucleus, plastid	46.61	50.46
PGSC0003DMT400015190	Potato	nucleus, plastid	49.15	47.15
CDY47258	Canola	plastid	45.76	44.63
Bra005888.1-P	Field mustard	plastid	44.92	43.8
Bra034826.1-P	Field mustard	plastid	43.22	43.22
CDY01039	Canola	mitochondrion, nucleus	43.22	43.22
CDY08510	Canola	nucleus, plastid	43.22	43.22
Bra009178.1-P	Field mustard	plastid	44.92	43.09
CDY64732	Canola	plastid	44.92	43.09
AT5G06270.1	Thale cress	mitochondrion, plastid	44.07	42.62
PGSC0003DMT400072576	Potato	plastid	38.14	42.45
CDX80998	Canola	plastid	43.22	42.15
Bra028737.1-P	Field mustard	plastid	43.22	42.15
TraesCS7D01G324300.1	Wheat	cytosol	22.88	41.54
Bra038666.1-P	Field mustard	plastid	40.68	41.38
GSMUA_Achr11P...	Banana	nucleus	37.29	41.12
AT3G11600.1	Thale cress	plastid	40.68	41.03
GSMUA_Achr8P16130_001	Banana	cytosol	35.59	40.78
CDX73863	Canola	plastid	40.68	40.34
Bra001413.1-P	Field mustard	plastid	40.68	40.34
Os04t0684600-01	Rice	cytosol	27.12	39.51
GSMUA_Achr10P...	Banana	cytosol	38.98	38.98
CDY14087	Canola	plastid	44.07	38.52
Os08t0102250-00	Rice	cytosol	22.03	38.24
TraesCS2A01G383200.1	Wheat	cytosol	26.27	37.8
TraesCS2D01G379500.1	Wheat	cytosol	26.27	37.8
CDY04984	Canola	plastid	43.22	37.78
Zm00001d038287_P001	Maize	mitochondrion	41.53	37.4
TraesCS2B01G400400.1	Wheat	cytosol	26.27	37.35
TraesCS1D01G275300.1	Wheat	nucleus	41.53	36.84
GSMUA_Achr6P07030_001	Banana	cytosol, plastid	38.98	36.8
TraesCS2D01G597400.1	Wheat	cytosol, plastid	26.27	36.47
PGSC0003DMT400042213	Potato	cytosol	40.68	36.36
Os05t0442000-00	Rice	cytosol, mitochondrion, nucleus, plastid	40.68	36.36
Zm00001d001776_P001	Maize	cytosol, plastid	24.58	36.25
HORVU2Hr1G089140.1	Barley	cytosol	25.42	36.14
TraesCS1A01G275700.1	Wheat	plastid	40.68	35.82
HORVU3Hr1G083720.1	Barley	plastid	38.14	35.71
Zm00001d042754_P001	Maize	mitochondrion, plastid	36.44	34.96
TraesCS3D01G368200.1	Wheat	plastid	37.29	34.92
TraesCS3B01G407900.1	Wheat	plastid	37.29	34.65
TraesCS3A01G375700.1	Wheat	plastid	37.29	34.65
GSMUA_Achr6P19430_001	Banana	nucleus	33.9	34.48
Os01t0863500-01	Rice	plastid	37.29	34.11
Zm00001d025361_P001	Maize	nucleus	31.36	33.33
GSMUA_Achr9P02640_001	Banana	cytosol	33.05	33.05
EES10769	Sorghum	mitochondrion	32.2	33.04
TraesCS2D01G294500.1	Wheat	cytosol	31.36	32.17
TraesCS4B01G346800.1	Wheat	plastid	31.36	32.17
TraesCS2B01G312800.1	Wheat	cytosol	31.36	32.17
TraesCS2A01G296600.1	Wheat	cytosol	31.36	32.17
EES11682	Sorghum	cytosol, plastid	25.42	31.91
EES05192	Sorghum	nucleus, plastid	38.14	31.25
Os04t0415000-01	Rice	cytosol	29.66	30.17
HORVU1Hr1G074000.6	Barley	mitochondrion	40.68	29.63
Os02t0536500-01	Rice	mitochondrion	30.51	29.27
Zm00001d003763_P001	Maize	cytosol	32.2	29.01
OQU87905	Sorghum	mitochondrion, plastid	28.81	28.81
EES19598	Sorghum	cytosol, plastid	42.37	27.32
TraesCS1B01G284900.1	Wheat	extracellular, plastid, vacuole	41.53	26.78
Zm00001d016743_P001	Maize	nucleus	33.9	26.67
HORVU2Hr1G073380.7	Barley	cytosol, mitochondrion, nucleus, plastid	30.51	25.53
VIT_08s0007g02600.t01	Wine grape	plastid	46.61	25.23
GSMUA_Achr6P12990_001	Banana	nucleus	27.97	16.18

Protein Annotations

EnsemblPlants:PGSC0003DMT400050486	EnsemblPlantsGene:PGSC0003DMG400019617	PANTHER:PTHR33177	PANTHER:PTHR33177:SF8	PGSC:PGSC0003DMG400019617	SEG:seg
UniParc:UPI000294EB6A	UniProt:M1BQD0	MapMan:35.2	:	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400019617]

Coordinates

chr11:+:40670138..40670611

Molecular Weight (calculated)

13116.7 Da

IEP (calculated)

8.872

GRAVY (calculated)

-0.592

Length

118 amino acids

Sequence
(BLAST)

001: MNHTHAKVDL KLNLSPPRAT FPRNEPSPPR RSSSSSSSSS MEIIRSPTTS CVSQEPNPID DRSFSDCPSS SETTSMMLVG CPRCLMYVML SVNKPKCPKC
101: KSTVLLDLFH EERIKNSK

Best Arabidopsis Sequence Match ( AT5G06270.2 )
(BLAST)

001: MSRRSPKLEL KLNLSPPTSS QRRMVRSPSR SATTSPTSPP SSCVSSEMNQ DEPSVRYSTS PETTSMVLVG CPRCLMYVML SEDDPKCPKC KSTVLLDFLH
101: ENATNANANA AAASSGRKTR RN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FNI1]
SUBAcon: [mitochondrion,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.