Factsheet for TraesCS1D01G275300.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1
nucleus 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G275700.1	Wheat	plastid	90.23	89.55
HORVU1Hr1G074000.6	Barley	mitochondrion	83.46	68.52
TraesCS1B01G284900.1	Wheat	extracellular, plastid, vacuole	93.23	67.76
TraesCS3D01G368200.1	Wheat	plastid	57.89	61.11
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	22.56	60.0
KRH67976	Soybean	nucleus, plastid	42.11	51.38
KRG96232	Soybean	nucleus, plastid	42.11	51.38
TraesCS7D01G324300.1	Wheat	cytosol	23.31	47.69
Bra034826.1-P	Field mustard	plastid	41.35	46.61
GSMUA_Achr6P19430_001	Banana	nucleus	40.6	46.55
KRH30377	Soybean	plastid	38.35	46.36
CDY08510	Canola	nucleus, plastid	40.6	45.76
Bra038666.1-P	Field mustard	plastid	39.85	45.69
Solyc10g083140.1.1	Tomato	plastid	23.31	45.59
CDY01039	Canola	mitochondrion, nucleus	39.85	44.92
AT3G11600.1	Thale cress	plastid	39.1	44.44
KRH25293	Soybean	plastid	36.09	44.04
CDX73863	Canola	plastid	39.1	43.7
Bra001413.1-P	Field mustard	plastid	39.1	43.7
GSMUA_Achr10P...	Banana	cytosol	38.35	43.22
CDY64732	Canola	plastid	39.85	43.09
Bra009178.1-P	Field mustard	plastid	39.85	43.09
KRH22650	Soybean	cytosol, plastid	34.59	42.99
CDY47258	Canola	plastid	39.1	42.98
CDX80998	Canola	plastid	39.1	42.98
AT5G06270.1	Thale cress	mitochondrion, plastid	39.1	42.62
Bra028737.1-P	Field mustard	plastid	38.35	42.15
Bra005888.1-P	Field mustard	plastid	38.35	42.15
Solyc06g073990.1.1	Tomato	nucleus, plastid	37.59	42.02
KRH22649	Soybean	cytosol	21.05	41.79
PGSC0003DMT400050486	Potato	cytosol, plastid	36.84	41.53
PGSC0003DMT400072576	Potato	plastid	33.08	41.51
Solyc01g007870.2.1	Tomato	nucleus	38.35	40.48
PGSC0003DMT400015190	Potato	nucleus, plastid	36.84	39.84
TraesCS2D01G294500.1	Wheat	cytosol	33.83	39.13
TraesCS2D01G379500.1	Wheat	cytosol	24.06	39.02
CDY14087	Canola	plastid	39.1	38.52
TraesCS2D01G597400.1	Wheat	cytosol, plastid	24.06	37.65
CDY04984	Canola	plastid	37.59	37.04
PGSC0003DMT400042213	Potato	cytosol	36.09	36.36
KRH22648	Soybean	nucleus, plastid	33.08	36.36
KRH26665	Soybean	plastid	27.82	35.92
KRH26667	Soybean	nucleus, plastid	30.08	35.71
KRH26666	Soybean	cytosol	30.08	35.4
VIT_08s0007g02600.t01	Wine grape	plastid	39.85	24.31

Protein Annotations

EnsemblPlants:TraesCS1D01G275300.1

EnsemblPlantsGene:TraesCS1D01G275300

PANTHER:PTHR33177

PANTHER:PTHR33177:SF10

SEG:seg

MapMan:35.2

Description

No Description!

Coordinates

chr1D:+:371186350..371186751

Molecular Weight (calculated)

13231.6 Da

IEP (calculated)

10.694

GRAVY (calculated)

-0.629

Length

133 amino acids

Sequence
(BLAST)

001: MSRNNGKGPK LDLRLSFSRS RGGGRGGGGG GPSAAPPGGS NSPRRMSSSS SSSASPPSSC VSSEGSPEAG GGSGGSAMIL AGCPRCMMYV MLSREDPKCP
101: KCHSTVLLDF NDVGADHRNP GFGSGKVGKG KRG

Best Arabidopsis Sequence Match ( AT3G11600.1 )
(BLAST)

001: MSRRNKNGPK LELRLNLSPP PSQASQMSLV RSPNRSNTTS PSSCVSSETN QEENETITSM VLVGCPRCLM YVMLSDDDPK CPKCKSTVLL DFLQENAFAA
101: TTATAANTRR KKKTWWN

Arabidopsis Description

E3 ubiquitin-protein ligase [Source:UniProtKB/TrEMBL;Acc:Q9SRN4]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.