Factsheet for VIT_08s0007g02600.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 3
endoplasmic reticulum 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96232	Soybean	nucleus, plastid	38.53	77.06
KRH67976	Soybean	nucleus, plastid	38.07	76.15
AT5G06270.1	Thale cress	mitochondrion, plastid	39.45	70.49
Bra009178.1-P	Field mustard	plastid	38.53	68.29
CDY64732	Canola	plastid	38.53	68.29
GSMUA_Achr8P07800_001	Banana	cytosol, extracellular	15.6	68.0
Bra028737.1-P	Field mustard	plastid	37.61	67.77
CDY47258	Canola	plastid	36.24	65.29
CDX80998	Canola	plastid	35.32	63.64
Bra038666.1-P	Field mustard	plastid	33.49	62.93
CDY04984	Canola	plastid	38.53	62.22
Bra005888.1-P	Field mustard	plastid	33.95	61.16
AT3G11600.1	Thale cress	plastid	32.11	59.83
CDY14087	Canola	plastid	36.24	58.52
CDX73863	Canola	plastid	31.65	57.98
Bra001413.1-P	Field mustard	plastid	31.65	57.98
CDY01039	Canola	mitochondrion, nucleus	31.19	57.63
CDY08510	Canola	nucleus, plastid	31.19	57.63
Bra034826.1-P	Field mustard	plastid	30.73	56.78
GSMUA_Achr8P16130_001	Banana	cytosol	24.77	52.43
GSMUA_Achr11P...	Banana	nucleus	25.69	52.34
TraesCS7D01G324300.1	Wheat	cytosol	15.6	52.31
Zm00001d025361_P001	Maize	nucleus	26.61	52.25
TraesCS4B01G346800.1	Wheat	plastid	27.52	52.17
TraesCS2A01G296600.1	Wheat	cytosol	27.52	52.17
TraesCS2B01G312800.1	Wheat	cytosol	27.52	52.17
TraesCS2D01G294500.1	Wheat	cytosol	27.52	52.17
Solyc06g073990.1.1	Tomato	nucleus, plastid	27.06	49.58
EES10769	Sorghum	mitochondrion	26.15	49.57
Os04t0684600-01	Rice	cytosol	18.35	49.38
Os04t0415000-01	Rice	cytosol	26.15	49.14
PGSC0003DMT400015190	Potato	nucleus, plastid	27.52	48.78
TraesCS2B01G400400.1	Wheat	cytosol	18.35	48.19
TraesCS2A01G383200.1	Wheat	cytosol	17.89	47.56
TraesCS2D01G379500.1	Wheat	cytosol	17.89	47.56
GSMUA_Achr10P...	Banana	cytosol	25.69	47.46
GSMUA_Achr6P07030_001	Banana	cytosol, plastid	27.06	47.2
TraesCS2D01G597400.1	Wheat	cytosol, plastid	18.35	47.06
PGSC0003DMT400050486	Potato	cytosol, plastid	25.23	46.61
GSMUA_Achr6P19430_001	Banana	nucleus	24.31	45.69
Os08t0102250-00	Rice	cytosol	14.22	45.59
Zm00001d001776_P001	Maize	cytosol, plastid	16.51	45.0
HORVU2Hr1G089140.1	Barley	cytosol	16.97	44.58
Zm00001d003763_P001	Maize	cytosol	26.15	43.51
Os02t0536500-01	Rice	mitochondrion	24.31	43.09
Zm00001d038287_P001	Maize	mitochondrion	24.31	40.46
TraesCS1A01G275700.1	Wheat	plastid	24.77	40.3
TraesCS1D01G275300.1	Wheat	nucleus	24.31	39.85
GSMUA_Achr9P02640_001	Banana	cytosol	21.56	39.83
EES11682	Sorghum	cytosol, plastid	16.97	39.36
HORVU2Hr1G073380.7	Barley	cytosol, mitochondrion, nucleus, plastid	25.23	39.01
Zm00001d042754_P001	Maize	mitochondrion, plastid	21.56	38.21
EES05192	Sorghum	nucleus, plastid	25.23	38.19
Zm00001d016743_P001	Maize	nucleus	26.15	38.0
Os05t0442000-00	Rice	cytosol, mitochondrion, nucleus, plastid	22.94	37.88
TraesCS3D01G368200.1	Wheat	plastid	21.56	37.3
HORVU3Hr1G083720.1	Barley	plastid	21.56	37.3
Os01t0863500-01	Rice	plastid	22.02	37.21
TraesCS3B01G407900.1	Wheat	plastid	21.56	37.01
TraesCS3A01G375700.1	Wheat	plastid	21.1	36.22
HORVU1Hr1G074000.6	Barley	mitochondrion	24.77	33.33
OQU87905	Sorghum	mitochondrion, plastid	17.89	33.05
TraesCS1B01G284900.1	Wheat	extracellular, plastid, vacuole	26.15	31.15
EES19598	Sorghum	cytosol, plastid	26.15	31.15
GSMUA_Achr6P12990_001	Banana	nucleus	24.31	25.98

Protein Annotations

EntrezGene:100266492	wikigene:100266492	MapMan:35.2	EMBL:AM466662	ProteinID:CAN79170	ProteinID:CAN79170.1
ProteinID:CCB55475	ProteinID:CCB55475.1	UniProt:F6HKQ3	EMBL:FN595991	EntrezGene:LOC100266492	wikigene:LOC100266492
PANTHER:PTHR33177	PANTHER:PTHR33177:SF8	UniParc:UPI0002108511	ArrayExpress:VIT_08s0007g02600	EnsemblPlantsGene:VIT_08s0007g02600	EnsemblPlants:VIT_08s0007g02600.t01
RefSeq:XP_002281204	RefSeq:XP_002281204.1	RefSeq:XP_010654130.1	SEG:seg	:	:

Description

No Description!

Coordinates

chr8:-:16696632..16697817

Molecular Weight (calculated)

23608.1 Da

IEP (calculated)

9.807

GRAVY (calculated)

-0.528

Length

218 amino acids

Sequence
(BLAST)

001: MPLQLQNHHQ QGHAGAAGAT GGAHSIVLST RLARLVALTV HLFHSYHFLS SSAHIQLQDP FPSTPTPTLP SPPPPALPFG WERHPLPQGK RYLGDATRMS
101: RRNGPKLDLK LNLSPPRANR HAESPSRSAT LSPTSPPSSC VSSELNQDET LRYSNSPEAT SMVLVGCPRC LMYVMLSEDD PKCPKCKSTV LLDFLHDNNN
201: ATTTSSTATS TTKKTKKG

Best Arabidopsis Sequence Match ( AT5G06270.2 )
(BLAST)

001: MSRRSPKLEL KLNLSPPTSS QRRMVRSPSR SATTSPTSPP SSCVSSEMNQ DEPSVRYSTS PETTSMVLVG CPRCLMYVML SEDDPKCPKC KSTVLLDFLH
101: ENATNANANA AAASSGRKTR RN

Arabidopsis Description

Gb [Source:UniProtKB/TrEMBL;Acc:Q9FNI1]
SUBAcon: [plastid,mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.