Factsheet for PGSC0003DMT400068057

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400012249
PGSC0003DMT400067114

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G27600.1	PGSC0003DMT400012249	AT4G25200.1	21798944
AT4G27600.1	PGSC0003DMT400067114	AT4G32570.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097210.2.1	Tomato	plastid	87.07	88.87
VIT_16s0039g01580.t01	Wine grape	cytosol	60.4	81.69
CDY56323	Canola	cytosol	56.36	73.42
Zm00001d047033_P001	Maize	plastid	18.99	66.2
GSMUA_Achr11P...	Banana	plastid	62.42	65.19
CDY29847	Canola	plastid	58.99	64.04
Bra019040.1-P	Field mustard	plastid	58.99	63.9
AT4G27600.1	Thale cress	plastid	59.8	62.84
KRH29306	Soybean	plastid	56.57	62.78
KRH24012	Soybean	plastid	56.97	61.17
CDX89233	Canola	plastid	56.77	61.09
Bra026335.1-P	Field mustard	plastid	56.57	60.87
TraesCS1B01G206200.1	Wheat	mitochondrion, plastid	55.35	59.31
EER94451	Sorghum	plastid	55.76	59.23
TraesCS1A01G191300.1	Wheat	mitochondrion	55.15	59.09
TraesCS1D01G195000.1	Wheat	mitochondrion, plastid	55.15	59.09
Zm00001d030048_P001	Maize	plastid	54.55	58.95
Os10t0573000-01	Rice	mitochondrion	53.74	58.08
Zm00001d047032_P001	Maize	mitochondrion, plastid	20.0	56.9
HORVU0Hr1G000280.1	Barley	plastid	55.15	53.63
PGSC0003DMT400009476	Potato	cytosol	17.37	22.87

Protein Annotations

EntrezGene:102588019	Gene3D:3.40.1190.20	MapMan:35.2	InterPro:Carboh/pur_kinase_PfkB_CS	GO:GO:0003674	GO:GO:0003824
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150	GO:GO:0008152
GO:GO:0009507	GO:GO:0009536	GO:GO:0009987	GO:GO:0015979	GO:GO:0016301	GO:GO:0016310
GO:GO:0016740	GO:GO:0016773	InterPro:IPR029056	UniProt:M1CID3	PFAM:PF00294	EnsemblPlantsGene:PGSC0003DMG400026470
PGSC:PGSC0003DMG400026470	EnsemblPlants:PGSC0003DMT400068057	PRINTS:PR00990	ScanProsite:PS00584	PANTHER:PTHR43085	PANTHER:PTHR43085:SF1
InterPro:PfkB_dom	InterPro:Ribo/fructo_kinase	InterPro:Ribokinase-like	SUPFAM:SSF53613	UniParc:UPI000296985C	RefSeq:XP_006347595.1
SEG:seg	:	:	:	:	:

Description

Ribokinase [Source:PGSC_GENE;Acc:PGSC0003DMG400026470]

Coordinates

chr3:-:46533429..46538000

Molecular Weight (calculated)

52574.2 Da

IEP (calculated)

4.494

GRAVY (calculated)

-0.077

Length

495 amino acids

Sequence
(BLAST)

001: MSFSLISLSS SSSSIVSRTF PSFFSSETSS PPSSLLTLLR NQSNFSHVAS IYRNFGSSSC SFVSSGCSMS AADYVVPRAF SSSFESEFSA SGRNSDGESS
101: EVGSGENDEQ GAETDDEDQV LIVDEEDVGY SNSDLPQRWD VLGLGQAMVD FSGMVDNEFL ERLGLEKGTR KVVNHEERGK VLSAMDGCSY KAAAGGSLSN
201: SLVALARLGG QSIAGPALNV ALAGSIGSDP LGGFYRSKLR RANVNFLSAP VKDGTTGTVI VLTTSDAQRT MLAYQGTSSR INYDPCLAEA ITKTNILVVE
301: GYLFELPDTV RTISKVCEEA RKNGALVAIT ASDVSCIERH YDDYWEIMAN YADIVFANSE EAKAFCHFSS NESPLSATRY LSHFVPLVSV TDGPKGSYIG
401: VKGEAIYIPP SPCTPVDTCG AGDAYASGIL YGILRGVSDL KNMGSIASKV ASVVVGQQGT RLRVQDAIGL AESFSVHCRN STFWSDIGSD QISSL

Best Arabidopsis Sequence Match ( AT4G27600.1 )
(BLAST)

001: MAFSLLSPIP TSASLFFTLS AITASNNASS SSLSRLYSLY HPKGTLRTRT ATSFFGASGN LRIVSMAENR QLVCRIGGGA GAELDDMDEG EIQRIGNEDE
101: DDDEFIQVHA NNSSAASPER WDVLGLGQAM VDFSGVVDDE FLKKLGLEKG TRKLINHEER GKLLQAMDGC SYKAAAGGSL SNTLVALARL GSQSICDRPL
201: NVAMAGSIGG DPLGSFYGTK LRRANVNFLS APIKDGTTGT VIVLTTPDAQ RTMLAYQGTS SVVNYDSCLA SLIAKTNVFV VEGYLFELPD TIRTITKACE
301: EAHRNGALVA VTASDVSCIE RHYDDFWDIV GNYADIVFAN SDEARAFCHF SAEESPISAT RYMSHFVPFV SVTDGINGSY IGVKGEAIYI PPSPCVPVDT
401: CGAGDAYASG ILYGILRGVS DLKGMGDMAA TIAATVVGQQ GTRLRVQDAV ELARSHAFRL NGSGVRTDVG S

Arabidopsis Description

NARA5AT4g27600/T29A15_90 [Source:UniProtKB/TrEMBL;Acc:Q940Y6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.