CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY22782	Canola	plastid	21.26	14.52
CDY45132	Canola	plastid	21.26	14.52
CDX73555	Canola	cytosol	27.56	14.0
CDY32212	Canola	cytosol	85.83	11.02
CDY34427	Canola	cytosol	85.83	11.02
AT4G16130.1	Thale cress	cytosol	81.89	10.01
CDY57963	Canola	cytosol	66.93	8.75
CDY17385	Canola	cytosol, plastid	65.35	8.54
CDY52045	Canola	cytosol	3.15	3.81
GSMUA_Achr3P05480_001	Banana	cytosol	3.94	2.08
CDX90381	Canola	cytosol	0.0	0.0
CDY23135	Canola	cytosol	0.0	0.0
CDY30813	Canola	cytosol	0.0	0.0
CDY31721	Canola	cytosol	0.0	0.0
CDY45949	Canola	cytosol	0.0	0.0
CDY71091	Canola	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY52046	EnsemblPlantsGene:GSBRNA2T00004756001	Gene3D:3.30.230.10	Gene3D:3.30.70.890	InterPro:GHMP_kinase_C_sf	InterPro:IPR014721
InterPro:IPR036554	InterPro:Ribosomal_S5_D2-typ_fold_subgr	KEGG:00052+2.7.1.6	KEGG:00520+2.7.1.6	MetaCyc:PWY-3821	MetaCyc:PWY-6317
MetaCyc:PWY-6527	PANTHER:PTHR10457	PANTHER:PTHR10457:SF19	ProteinID:CDY52046	ProteinID:CDY52046.1	SEG:seg
UniParc:UPI0004EDE6E4	UniPathway:UPA00214	UniProt:A0A078IQ50	MapMan:35.1	:	:

Description

BnaC08g48100DBnaC08g48100D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IQ50]

Coordinates

chrLK033049:-:74771..75778

Molecular Weight (calculated)

14043.8 Da

IEP (calculated)

4.349

GRAVY (calculated)

0.017

Length

127 amino acids

Sequence
(BLAST)

001: MDQMTSSCGE ANKLLAMICQ VDSAEVIGLV EIPNHVRFWG IDSGIRHSVG GADYGSVRVK DEGIELLETE ASLDYLCNLS PHGYEARYAD KLPDFLLDPP
101: IFENFRVKTF KALLTSAMSN LLLLDYG

Best Arabidopsis Sequence Match ( AT4G16130.1 )
(BLAST)

0001: MSERAKLQKK KKVTEDLLDS LLLLPPWRNF AISQSHQSII ESSSQRLPEK MRIDENEGVS ASSKHLVFAY YVTGHGFGHA TRVVEVVRHL IAAGHDVHVV
0101: TGAPDFVFTS EIQSPRLKIR KVLLDCGAVQ ADALTVDRLA SLEKYVETAV VPRAEILETE VEWLHSIKAD FVVSDVVPVA CRAAADAGIR SVCVTNFSWD
0201: FIYAEYVMAA GYHHRSIVWQ IAEDYSHCEF LIRLPGYCPM PAFRDVIDVP LVVRRLHKSR KEVRKELGIA EDVNVVILNF GGQPSGWNLK ETSLPTGWLC
0301: LVCGASETLE LPPNFIKLAK DAYTPDIIAA SDCMLGKIGY GTVSEALSYK VPFVFVRRDY FNEEPFLRNM LEFYQCGVEM IRRDLLMGQW TPYLERAVSL
0401: KPCYEGGING GEIAAHILQE TAIGRHCASD KLSGARRLRD AIILGYQLQR VPGRDIAIPE WYSRAENELG QSAGSSPTVQ ANENNSLVES CIDDFDILQG
0501: DVQGLSDTCT FLKSLAMLDA IHDSEKSTEK KTVRERKAAG GLFNWEEEIF VARAPGRLDV MGGIADYSGS LVLQMPIREA CHVAVQRNLP GKHRLWKHAQ
0601: ARQQAKGQVP TPVLQIVSYG SEISNRAPTF DMDLSDFMDG DEPISYEKAR KFFAQDPAQK WAAYVAGTIL VLMIELGVRF EDSISLLVSS AVPEGKGVSS
0701: SAAVEVASMS AIAAAHGLSI DPRDLAILCQ KVENHIVGAP CGVMDQMTSS CGEANKLLAM ICQPAEVVGL VEIPNHVRFW GIDSGIRHSV GGADYRSVRV
0801: GAYMGRKMIK SMASSILSPS ASSANGGNPE ELEDEGIDLL EAEASLDYLC NLSPHRYEAR YADKLPDIML GQTFIEEYAD HDDPVTVIDQ KRSYSVKAPA
0901: RHPIYENFRV KTFKALLTSA TSDEQLTALG GLLYQCHYSY SACGLGSDGT NRLVQLVQGM QHNKSNSEDG TLYGAKITGG GSGGTVCVVG RNSLRSSQQI
1001: LEIQQRYKAA TGYLPLIFEG SSPGAGKFGY LRIRRRISL

Arabidopsis Description

ARA1L-arabinokinase [Source:UniProtKB/Swiss-Prot;Acc:O23461]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.