Factsheet for TraesCS2D01G480100.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G505600.1	Wheat	cytosol	97.31	96.69
TraesCS2D01G480800.1	Wheat	cytosol	74.52	76.91
TraesCS2D01G434400.1	Wheat	cytosol	40.0	75.15
TraesCS2D01G341200.1	Wheat	cytosol	56.45	58.86
TraesCS5D01G022500.1	Wheat	cytosol	33.01	43.24
TraesCS5D01G042900.2	Wheat	cytosol	38.49	42.47
TraesCS1D01G224400.2	Wheat	golgi	37.53	40.21
Os05t0353400-01	Rice	cytosol, plasma membrane, plastid	37.42	40.09
EES19347	Sorghum	cytosol	36.77	39.31
Zm00001d038021_P001	Maize	plastid	36.99	39.14
Zm00001d010512_P001	Maize	plastid	36.45	38.7
TraesCS5D01G057000.1	Wheat	cytosol	36.88	38.67
TraesCS1D01G066600.1	Wheat	cytosol	36.45	38.61
TraesCS3D01G318400.1	Wheat	cytosol, peroxisome, plastid	26.45	37.73
EES13277	Sorghum	cytosol	29.25	37.11
Bra029733.1-P	Field mustard	cytosol	32.58	34.75
CDY53085	Canola	cytosol	32.58	34.71
CDY44668	Canola	cytosol	32.58	34.71
TraesCS4D01G193700.1	Wheat	endoplasmic reticulum	32.58	34.35
TraesCS5D01G094600.1	Wheat	cytosol	31.61	33.72
VIT_08s0058g00270.t01	Wine grape	cytosol	31.61	33.72
PGSC0003DMT400068505	Potato	cytosol	31.51	33.56
AT3G08947.1	Thale cress	cytosol	23.55	33.33
TraesCS5D01G095100.1	Wheat	golgi	30.97	33.03
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	31.61	29.37
CDY28068	Canola	cytosol	14.19	27.27
Bra029635.1-P	Field mustard	cytosol	5.91	22.27
TraesCS2D01G572700.1	Wheat	cytosol	14.09	14.6

Protein Annotations

Gene3D:1.25.10.10	MapMan:35.1	InterPro:ARM-like	InterPro:ARM-type_fold	ncoils:Coil	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0006886	GO:GO:0006913
GO:GO:0008150	GO:GO:0008536	GO:GO:0008565	InterPro:HEAT_type_2	InterPro:IPR001494	InterPro:IPR011989
InterPro:IPR021133	InterPro:Importin-beta_N	InterPro:KPNB1_plant	PFAM:PF03810	PFscan:PS50077	PFscan:PS50166
PANTHER:PTHR10527	PANTHER:PTHR10527:SF44	SUPFAM:SSF48371	EnsemblPlantsGene:TraesCS2D01G480100	EnsemblPlants:TraesCS2D01G480100.1	SEG:seg

Description

No Description!

Coordinates

chr2D:+:580970677..580973556

Molecular Weight (calculated)

102873.0 Da

IEP (calculated)

4.616

GRAVY (calculated)

-0.118

Length

930 amino acids

Sequence
(BLAST)

001: MDESIDMSDA LAHASNPDDN IRSIGEGMLK RLHNLDLPNF LLRLSSELLR EGSPEESRVL AAITLKNSLD SKDPALKDAH EDLLSLKWLN LHPSIRSEIK
101: TNLLMTLESD STQSHSRRPS SKVIAKVIAR VACMEIPRNQ WLDLVGKLVD NMASSSSSLK QATLEVLEYI FEEKIPKVLK GNQVDDVMAC VINALKNQVL
201: SSEVHLAALK VLLNILELAK FKGHAWRNSI VAVCDVAVVT VCDVAGGRGE SGAEIKEAAF ECLVAMASTC HTKLEPYKEI MLSLTSQALE GDVESVKVQC
301: IKLWMTICQE EINWEEEEEE EEGEEEEEEE EEEEEEEEEG ASSFIDTLCS FVPLLLRTYL KEEGDLKQED IWKQEDEGDG DISMTAEQEE EGDGDISMTA
401: EQEEEGDENV EQEEDETLQG ISMTCLGLAA RIMKGGIVPL VMHFVVENMN GPHKVAALSP LGFILEGPSV KQLAPVVDLL LTMMEDGEEG VRGKAAWSLG
501: RLFELVGANR IMRNKVVTLD GIMRVLIEGS KDVPQVSTEV HGALCFLARS YGDDAKSKSN LSQLSPFVPP VIDALICASD LARDTPYRLL ACPYKALSEI
601: VRVSHVQDLQ VCRALIGLMS HIMRRLNTVL HGHGAISSLK RKNQLEVLLC GLLNVLIHKL GSSKNFTLKW SAKCVLLLLC PLLTRDSTSA RDGAALAIGA
701: LAHAIGGDFG QHMPMLLQYF SVKRLFPVYL EVMCDICQVL RKKGKKEEVV PSFDHIMDVL CEGMTEVTLQ PPILSSIGQI ALALALGEKF EKYLPLVMEK
801: LLVVEKLTQV KSEEQDEDHS TKVREGIFEA YYGIIGGITD PRSGFKVGLA LLDFSEQERK RRDRDGRTLT AGVHALSQLP PRVEVWSEGF IRLMQEASIY
901: GRVQVTEGQQ KASIYGRVQV TEGQQSGGLR

Best Arabidopsis Sequence Match ( AT3G08947.1 )
(BLAST)

001: MERNYIMKMV CETACSKEAE IRQAAFECLV SIASTYYEVL EHYIQTLFEL TSNAVKGDEE SVSLQAIEFW SSICDEEIDR QEYDSPASGD SSPPHSSFIE
101: KALPHLVQML LETLLKQEED QDHDDDVWNI SMAGGTCLGL VARTVGDHVV PLVMPFVEKN ISSPDWRCRE AATYAFGSIL EGPTIDKLAP MVAAGLEFLL
201: NATKDQNNHV RDTTAWTLSR IFEFLHSPDS GFSVISPENL PRIVSVLLES IKDVPNVAEK VCGAIYNLAQ GYEDSGASSS LLSPYLTEII THLLAAAERT
301: DGAESKLRGA AYETLNEVVR CSNLSEASSI IAHLLPAIMK KLAETMDLPI ISTDDREKQA EVQASLCGVL QVIIQKLSGR EDTKPIIMQS ADDIMRLFLR
401: VFGCHSSSVH EEAMLAIGAL AYATGAEFVK YMPELFKYLQ MGLQNFEEYQ VCSITVGVLG DICRALDEKI LPFCDQIMGL LIQNLQSGAL HRSVKPPIFS
501: CFGDIALAIG AHFERYVAPA VQIMQGAAQV CAQMDTLDEE LMDYANQLRR SIFEAYSGIL QGFKDTKAEL MMPYAQHLLQ FVELVSKDPL RDESVTKAAV
601: AAMGDLADVV GENTKQLFQN FTFFGEFLNE CLESEDEDLK VTARWTQGMI ARLMHPS

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WML1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.