Factsheet for Zm00001d010512_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 23198870

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES19347	Sorghum	cytosol	94.63	95.29
Zm00001d038021_P001	Maize	plastid	94.98	94.65
Os05t0353400-01	Rice	cytosol, plasma membrane, plastid	87.33	88.13
TraesCS1D01G224400.2	Wheat	golgi	86.07	86.87
TraesCS1A01G222800.2	Wheat	golgi, unclear	85.96	86.75
TraesCS1B01G236100.3	Wheat	cytosol	86.07	86.67
HORVU1Hr1G060180.2	Barley	cytosol	85.05	85.83
TraesCS1A01G065600.1	Wheat	cytosol	80.71	81.36
TraesCS1B01G083800.1	Wheat	cytosol	80.71	81.36
TraesCS1D01G066600.1	Wheat	cytosol	81.05	80.87
HORVU1Hr1G013580.2	Barley	cytosol, plastid	80.94	73.55
VIT_08s0058g00270.t01	Wine grape	cytosol	68.38	68.69
PGSC0003DMT400068505	Potato	cytosol	66.89	67.12
Bra029733.1-P	Field mustard	cytosol	65.98	66.28
CDY53085	Canola	cytosol	65.98	66.21
CDY44668	Canola	cytosol	65.98	66.21
AT3G08947.1	Thale cress	cytosol	49.2	65.6
TraesCS1A01G065000.1	Wheat	cytosol	24.54	63.42
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	67.12	58.74
TraesCS7B01G222000.1	Wheat	cytosol	51.48	54.4
Zm00001d041556_P002	Maize	cytosol	59.7	52.99
TraesCS5D01G042900.2	Wheat	cytosol	46.69	48.52
Zm00001d030694_P002	Maize	mitochondrion	59.36	48.42
TraesCS3D01G318400.1	Wheat	cytosol, peroxisome, plastid	35.96	48.31
TraesCS5B01G034200.1	Wheat	cytosol	45.55	48.13
TraesCS5D01G022500.1	Wheat	cytosol	37.33	46.06
TraesCS5D01G057000.1	Wheat	cytosol	45.43	44.87
TraesCS5B01G051300.1	Wheat	cytosol	44.98	44.42
TraesCS3A01G325000.1	Wheat	cytosol	25.8	43.46
TraesCS2D01G434400.1	Wheat	cytosol	24.2	42.83
TraesCS2A01G435400.1	Wheat	cytosol	36.07	39.6
TraesCS2D01G341200.1	Wheat	cytosol	40.3	39.57
TraesCS2B01G362200.1	Wheat	cytosol	31.05	39.08
TraesCS2D01G480800.1	Wheat	cytosol	38.7	37.62
TraesCS2B01G506500.1	Wheat	cytosol	38.81	37.61
TraesCS2D01G480100.1	Wheat	cytosol	38.7	36.45
TraesCS2B01G505600.1	Wheat	cytosol	38.47	36.0
CDY28068	Canola	cytosol	19.63	35.54
Bra029635.1-P	Field mustard	cytosol	7.76	27.53
Zm00001d026696_P005	Maize	cytosol	19.86	19.55
Zm00001d002936_P010	Maize	cytosol	19.75	19.42

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.1	UniProt:A0A1D6FRJ2	ProteinID:AQK94207.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006886	GO:GO:0006913	GO:GO:0008150
GO:GO:0008536	GO:GO:0008565	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	InterPro:KPNB1_plant
PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF44	SMART:SM00913
SUPFAM:SSF48371	UniParc:UPI0008438EA3	EnsemblPlantsGene:Zm00001d010512	EnsemblPlants:Zm00001d010512_P001	EnsemblPlants:Zm00001d010512_T001	SEG:seg

Description

ARM repeat superfamily protein

Coordinates

chr8:-:118588081..118591573

Molecular Weight (calculated)

96157.0 Da

IEP (calculated)

4.356

GRAVY (calculated)

0.024

Length

876 amino acids

Sequence
(BLAST)

001: MEKDTAMDIT QVLIAAQSPD ANLRTVAEGN LTQFQEQNFP NFLLSLSIEL SNDEKPPESR RLAGIILKNS LDAKDSAKKE LLTQQWVSVD PSIKLKIKEL
101: LLVTLGSSVH DARHTSSQVI AKVASIEIAR REWQDLVAKL LGNMTSAGAP APLKQATLEA LGYVCEEISP QDLEQDQVNA VLTAVVQGMN QTELSPEVRL
201: AAVKALYNAL DFAESNFANE MERNYIMKVV CDTAVSKEVE IRQAAFECLV AIASTYYSHL EPFMETIFYL TANAVKGDEE PVALQAVEFW SAICDEEIAL
301: QDEYEGSEDG NSAIHFRFIE KALPLLVPLL LETLLKQEED QDQDDNAWNI SMSGGTCLGL ISRTVGDAVV PLVMPFVETN ITKPDWHCRE AATFAFGSIL
401: EGPSVGKLAP LVQAGLDFLL NTMNDANSQV KDTTAWTLGR VFELLHSPAG INSIINGSNL PRIMSVLLES TKDAPNVAEK VCGAIYFLAQ GYEDAESTSS
501: VLTPYLSNTI AALLSAADRA ETTHFRLRAS AYEALNEIVR VSNIPETSGI IAQLLQEIMR RLNLTFDLHI LSSGDKEKQS DLQALLCGVL QVIIQKLSST
601: DAKSIISQTT DQLMVLFLRV FACHNSTVHE EAMLAIGALA YATGPDFVKY MPNFFTYLEA GLQNYEEYQV CSISVGVVGD ICRALEDKSL PFCDRIMTVL
701: LKDLSSSMLN RSVKPLIFSC FGDIALAIGE NFEKYLPYAV PMLQGAAGLL GTLDLSDDDM VDYGNQLRRG IFEAYSGILQ GIKGPKAQLM IPYATHLLQF
801: TEAVSKDRSR DDSVTKAAVA VLGDLADTLG QSSKDLFKTH LFHVEFLREC QAQELDDEVR ETAQWAQGMI NQAVVS

Best Arabidopsis Sequence Match ( AT3G08947.1 )
(BLAST)

001: MERNYIMKMV CETACSKEAE IRQAAFECLV SIASTYYEVL EHYIQTLFEL TSNAVKGDEE SVSLQAIEFW SSICDEEIDR QEYDSPASGD SSPPHSSFIE
101: KALPHLVQML LETLLKQEED QDHDDDVWNI SMAGGTCLGL VARTVGDHVV PLVMPFVEKN ISSPDWRCRE AATYAFGSIL EGPTIDKLAP MVAAGLEFLL
201: NATKDQNNHV RDTTAWTLSR IFEFLHSPDS GFSVISPENL PRIVSVLLES IKDVPNVAEK VCGAIYNLAQ GYEDSGASSS LLSPYLTEII THLLAAAERT
301: DGAESKLRGA AYETLNEVVR CSNLSEASSI IAHLLPAIMK KLAETMDLPI ISTDDREKQA EVQASLCGVL QVIIQKLSGR EDTKPIIMQS ADDIMRLFLR
401: VFGCHSSSVH EEAMLAIGAL AYATGAEFVK YMPELFKYLQ MGLQNFEEYQ VCSITVGVLG DICRALDEKI LPFCDQIMGL LIQNLQSGAL HRSVKPPIFS
501: CFGDIALAIG AHFERYVAPA VQIMQGAAQV CAQMDTLDEE LMDYANQLRR SIFEAYSGIL QGFKDTKAEL MMPYAQHLLQ FVELVSKDPL RDESVTKAAV
601: AAMGDLADVV GENTKQLFQN FTFFGEFLNE CLESEDEDLK VTARWTQGMI ARLMHPS

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WML1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.