Factsheet for PGSC0003DMT400068505

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	99.08	86.41
VIT_08s0058g00270.t01	Wine grape	cytosol	77.78	77.87
Bra029733.1-P	Field mustard	cytosol	73.42	73.51
CDY44668	Canola	cytosol	73.42	73.42
CDY53085	Canola	cytosol	73.31	73.31
AT3G08947.1	Thale cress	cytosol	54.41	72.3
GSMUA_Achr8P01910_001	Banana	cytosol	65.06	70.73
GSMUA_Achr5P28110_001	Banana	cytosol	68.04	70.63
Os05t0353400-01	Rice	cytosol, plasma membrane, plastid	69.19	69.59
GSMUA_Achr10P...	Banana	cytosol	67.01	69.56
EES19347	Sorghum	cytosol	68.16	68.39
HORVU1Hr1G060180.2	Barley	cytosol	67.81	68.2
Zm00001d038021_P001	Maize	plastid	68.61	68.15
TraesCS1D01G224400.2	Wheat	golgi	67.7	68.09
EES13277	Sorghum	cytosol	57.16	68.08
TraesCS1A01G222800.2	Wheat	golgi, unclear	67.58	67.97
TraesCS1B01G236100.3	Wheat	cytosol	67.7	67.93
Zm00001d010512_P001	Maize	plastid	67.12	66.89
TraesCS1A01G065600.1	Wheat	cytosol	65.75	66.05
Os03t0294600-01	Rice	cytosol	27.84	65.5
TraesCS1B01G083800.1	Wheat	cytosol	64.95	65.25
TraesCS1D01G066600.1	Wheat	cytosol	65.41	65.03
PGSC0003DMT400047662	Potato	cytosol	64.03	64.18
TraesCS4B01G192500.1	Wheat	endoplasmic reticulum	64.83	64.17
TraesCS4D01G193700.1	Wheat	endoplasmic reticulum	64.72	64.06
TraesCS4A01G111400.1	Wheat	endoplasmic reticulum	64.72	64.06
PGSC0003DMT400050414	Potato	cytosol	63.69	64.06
HORVU1Hr1G013580.2	Barley	cytosol, plastid	65.06	58.92
HORVU4Hr1G055910.2	Barley	cytosol, plastid	64.72	58.43
TraesCS1A01G065000.1	Wheat	cytosol	21.76	56.05
TraesCS7B01G222000.1	Wheat	cytosol	45.25	47.65
TraesCS5D01G042900.2	Wheat	cytosol	41.47	42.94
TraesCS3D01G318400.1	Wheat	cytosol, peroxisome, plastid	31.84	42.64
TraesCS5B01G034200.1	Wheat	cytosol	40.32	42.46
TraesCS5D01G057000.1	Wheat	cytosol	40.55	39.91
TraesCS5D01G022500.1	Wheat	cytosol	32.19	39.58
TraesCS5B01G051300.1	Wheat	cytosol	39.98	39.35
TraesCS3A01G325000.1	Wheat	cytosol	22.8	38.27
TraesCS2D01G434400.1	Wheat	cytosol	20.16	35.56
CDY28068	Canola	cytosol	19.7	35.54
TraesCS2D01G341200.1	Wheat	cytosol	34.94	34.19
TraesCS2A01G435400.1	Wheat	cytosol	30.36	33.21
TraesCS2B01G506500.1	Wheat	cytosol	33.79	32.63
TraesCS2B01G362200.1	Wheat	cytosol	26.0	32.61
TraesCS2D01G480800.1	Wheat	cytosol	33.33	32.3
TraesCS2D01G480100.1	Wheat	cytosol	33.56	31.51
TraesCS2B01G505600.1	Wheat	cytosol	33.22	30.98
Bra029635.1-P	Field mustard	cytosol	8.02	28.34

Protein Annotations

Gene3D:1.25.10.10	EntrezGene:102599745	MapMan:23.5.1.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674
GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006810	GO:GO:0006886	GO:GO:0006913
GO:GO:0008150	GO:GO:0008536	GO:GO:0008565	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N
InterPro:KPNB1_plant	UniProt:M1CJ58	PFAM:PF03810	PFAM:PF13513	EnsemblPlantsGene:PGSC0003DMG400026641	PGSC:PGSC0003DMG400026641
EnsemblPlants:PGSC0003DMT400068505	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF44	SMART:SM00913	SUPFAM:SSF48371
UniParc:UPI000295621A	RefSeq:XP_006359549.1	SEG:seg	:	:	:

Description

Importin beta-1 [Source:PGSC_GENE;Acc:PGSC0003DMG400026641]

Coordinates

chr9:+:10349607..10353612

Molecular Weight (calculated)

96225.2 Da

IEP (calculated)

4.345

GRAVY (calculated)

0.001

Length

873 amino acids

Sequence
(BLAST)

001: MALEITQFLL AAQSADAKIR TESESNLSQF REQNLPGFFL SLAVELSNDG KPTESRRLAG IVLKNSLDAK ETVRKQQLVQ QWLAIDSSCK SQIKSLLLSC
101: LGSSVREASH TASQVIAKIS SIEVPQKQWP ELIGSLLVNM TQQGSPASVK QATLETLGYV CEEISHHDLV QDEVNSVLTA VVQGMNVEEE SVEVRLAATR
201: ALYNALDFAQ TNFDNEMERN YIMKVICEAA TAKEGQLRQA AFECLVSIAS TYYELLEPYM QTLFQLTAKA VKEDEEAVSL QAIEFWSSIC DEEIELQDYE
301: VPDSGDSSVQ HSRFIEKALG VLVPMLLETL LKQDEEQDQD DDIWNLAMAG GTCLGLVART VGDAVVPLVM PFVEANIMKP DWRSREAAIY AFGSILEGPS
401: IEKLSPMVHA GLKHLLDAMK DNNEHIRDTT AWTLSRIFEL LHTPASGFSV ITPANLQQIV EVLLESIKDV PHVAEKVCGA IYFLSQGYED AGTSSSLLTP
501: FITQIISSLI ATADRTDSGS KLRTTAYETL NEVVRCSNLS ETSQIINHLC PVIMDKLAQT FELQILSSDD REKQGDLQAS LCGVLQVIIQ KLSSADETKA
601: IILQVADQIM TLFLKVFACR SSTVHEEAML AIGALAYATG SDFLKYMPEF YKYIEMGLQN FEEYQVCSIS VGVVGDICRA LDDKILPYCD GIMTLLLKDL
701: SSGELNRSVK PPIFSCFGDI ALAIGEHFEK YLQYALPMMQ SAAQMCAQLD NSDDEMLEYG NQLRRSIFEA YSGLLQGFKS TKANLMLPHA PHLLQFIELV
801: AKDSPRDESV TKAAVAVLGD LADALGSSAK TIFKDPAFLE QLLGECLQSD DEQLKETATW TQGMIGRAFS VCG

Best Arabidopsis Sequence Match ( AT5G53480.1 )
(BLAST)

001: MAMEVTQLLI NAQSIDGTVR KHAEESLKQF QEQNLAGFLL SLAGELANDE KPVDSRKLAG LVLKNALDAK EQHRKYELVQ RWLALDMSTK SQIRAFLLKT
101: LSAPVPDVRS TASQVIAKVA GIELPQKQWP ELIVSLLSNI HQLPAHVKQA TLETLGYLCE EVSPDVVEQE HVNKILTAVV QGMNAAEGNT DVRLAATRAL
201: YMALGFAQAN FNNDMERDYI MRVVCEATLS PEVKIRQAAF ECLVSIASTY YEKLAHYMQD IFNITAKAVR EDDESVALQA IEFWSSICDE EIDILEEYGG
301: EFAGDSDVPC FYFTKQALPG LVPLLLETLL KQEEDQDLDE GAWNIAMAGG TCLGLVARAV GDDIVPHVMP FIEEKISKPD WREREAATYA FGSILEGPSA
401: DKLMAIVNAA LTFMLNALTN DPSNHVKDTT AWTLGRIFEF LHGSTIETPI INQANCQQII TVLIQSMNDA PNVAEKACGA LYFLAQGYED IGPSSPLTPF
501: FQEIIKSLLA VAHREDATES RLRTAAYEAL NEVVRCSTDE TSTMVLQLVP VIMMELHNTL EGEKLSLDER EKQNELQGLL CGCLQVIIQK LGSEPTKSKF
601: MEYADQMMGL FLRVFGCRSA TAHEEAMLAI GALAYAAGPN FAKYMPEFYK YLEMGLQNFE EYQVCAVTVG VVGDVCRALE DKILPYCDGI MTQLLKDLSS
701: NQLHRSVKPP IFSCFGDIAL AIGEDFDKYW RYSMPMLQSA AELSAHSAGA DDEMTEYTNS LRNGILEAYS GIFQGFKNSA KTQLLIPFAP HILQFLDSIY
801: MEKDMDEVVM KTAIGVLGDL ADTLGSHVGG LIQQSVSSKE FLNECLSSED HTIKEAAEWA KHAITRAISV

Arabidopsis Description

KPNB1Importin subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.