Factsheet for TraesCS4B01G192500.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G111400.1	Wheat	endoplasmic reticulum	98.53	98.53
TraesCS4D01G193700.1	Wheat	endoplasmic reticulum	98.19	98.19
HORVU4Hr1G055910.2	Barley	cytosol, plastid	96.26	87.8
Os03t0294600-01	Rice	cytosol	36.17	85.98
GSMUA_Achr5P28110_001	Banana	cytosol	68.71	72.06
GSMUA_Achr8P01910_001	Banana	cytosol	64.85	71.23
GSMUA_Achr10P...	Banana	cytosol	66.89	70.15
TraesCS1B01G236100.3	Wheat	cytosol	66.33	67.24
VIT_08s0058g00270.t01	Wine grape	cytosol	65.76	66.51
TraesCS1B01G083800.1	Wheat	cytosol	65.08	66.05
PGSC0003DMT400068505	Potato	cytosol	64.17	64.83
AT3G08947.1	Thale cress	cytosol	47.28	63.47
Bra029733.1-P	Field mustard	cytosol	62.59	63.3
CDY44668	Canola	cytosol	62.59	63.23
CDY53085	Canola	cytosol	62.24	62.89
TraesCS5B01G088700.1	Wheat	cytosol	56.12	56.77
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	64.4	56.74
TraesCS5B01G088400.1	Wheat	cytosol	56.01	56.65
TraesCS7B01G222000.1	Wheat	cytosol	42.74	45.48
TraesCS5B01G034200.1	Wheat	cytosol	38.44	40.89
TraesCS5B01G051300.1	Wheat	cytosol	38.32	38.11
CDY28068	Canola	cytosol	18.93	34.5
TraesCS2B01G362200.1	Wheat	cytosol	26.87	34.05
TraesCS2B01G506500.1	Wheat	cytosol	34.47	33.63
TraesCS2B01G505600.1	Wheat	cytosol	34.01	32.05
TraesCS4B01G307300.1	Wheat	cytosol	3.4	29.13
Bra029635.1-P	Field mustard	cytosol	7.6	27.13
TraesCS2B01G624100.1	Wheat	cytosol	19.5	19.18
TraesCS2B01G426000.1	Wheat	cytosol	6.12	14.84

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.1	InterPro:ARM-like	InterPro:ARM-type_fold	GO:GO:0003674	GO:GO:0005215
GO:GO:0005488	GO:GO:0005515	GO:GO:0006810	GO:GO:0006886	GO:GO:0006913	GO:GO:0008150
GO:GO:0008536	GO:GO:0008565	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	InterPro:KPNB1_plant
PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF44	SMART:SM00913
SUPFAM:SSF48371	SignalP:SignalP-noTM	EnsemblPlantsGene:TraesCS4B01G192500	EnsemblPlants:TraesCS4B01G192500.1	SEG:seg	:

Description

No Description!

Coordinates

chr4B:+:415506148..415509058

Molecular Weight (calculated)

97100.2 Da

IEP (calculated)

4.417

GRAVY (calculated)

0.040

Length

882 amino acids

Sequence
(BLAST)

001: MFSWAIFVLQ VQLMDITEVL LATQSHDGQI RNVAEGNIKQ FEEQSLPQFL QALSAELSND NKPPVSRRLA GILLKNSLDA NDLVRKEKCT QRWISVDPAI
101: KSQVKGSLLM TLGSPVSDAH RSSSQVIAKI ASIEIPLQGW PELIVSLLGN MTKPDASPSL KQATLDAIGY VCEEISPKDL EQDQVNAVLT AVVQGMNHVE
201: NSSGVRLAAV KALYNALDFA ETNFQNESER NYIMKVVCET AISKEADIRK AAFECLVSIA STYYDLLEPY MQTLFELTAN AARADEEQVA LQAIEFWSTI
301: CDEEVAIQED AEESGDVSPE CHFHFIEKAL PLLVPMLLET LLKQEEDQDE DDGIWNISMA GGTCLGLVAT TVKDAIVPLV MPFIEGNITK PDWHSREAAT
401: FAFGSILEGP SVEKLAPLVH AGFDFLLNAT KDQNNHVRET TAWALSRAFE FLHSPTSGVS VVTNANLPHV IEIMLTSIKD SPNVAEKICG ALYFLAHGYE
501: NAGSMSSVLS LYFGQLVSAL LATADRSDSN NSRLCASAYE TLNEIVRCSS IADTLNMIVL LLQEILKRLN QTFEFQITSS EDKEKQSDLQ ALLCGVVQVI
601: LQKFSNCDDK SVIIQFADQI MVLFLRVFSC DCSNVHEEAM LAIGALAYAT GPEFVKYMPE FHKYLEMGLQ NFGAYQVCCV SVGVVADICR ALDDKVLPYC
701: DAIMSALLKD LSSPELHRSV KPPILSCIGD IALTIGEHFE KYVPYTVPML QGAAELCSRM DLPDDDSTEY KNELRRSIFE AYSGILQGVK NSKSELMVPY
801: ASHIFQFAEL VLRETSRDEG LTKAGVALVG DLADALGPSI KLLLKNSNFH SELLGRCSQS DDEQLRETAS WVQGVISRVL VS

Best Arabidopsis Sequence Match ( AT3G08947.1 )
(BLAST)

001: MERNYIMKMV CETACSKEAE IRQAAFECLV SIASTYYEVL EHYIQTLFEL TSNAVKGDEE SVSLQAIEFW SSICDEEIDR QEYDSPASGD SSPPHSSFIE
101: KALPHLVQML LETLLKQEED QDHDDDVWNI SMAGGTCLGL VARTVGDHVV PLVMPFVEKN ISSPDWRCRE AATYAFGSIL EGPTIDKLAP MVAAGLEFLL
201: NATKDQNNHV RDTTAWTLSR IFEFLHSPDS GFSVISPENL PRIVSVLLES IKDVPNVAEK VCGAIYNLAQ GYEDSGASSS LLSPYLTEII THLLAAAERT
301: DGAESKLRGA AYETLNEVVR CSNLSEASSI IAHLLPAIMK KLAETMDLPI ISTDDREKQA EVQASLCGVL QVIIQKLSGR EDTKPIIMQS ADDIMRLFLR
401: VFGCHSSSVH EEAMLAIGAL AYATGAEFVK YMPELFKYLQ MGLQNFEEYQ VCSITVGVLG DICRALDEKI LPFCDQIMGL LIQNLQSGAL HRSVKPPIFS
501: CFGDIALAIG AHFERYVAPA VQIMQGAAQV CAQMDTLDEE LMDYANQLRR SIFEAYSGIL QGFKDTKAEL MMPYAQHLLQ FVELVSKDPL RDESVTKAAV
601: AAMGDLADVV GENTKQLFQN FTFFGEFLNE CLESEDEDLK VTARWTQGMI ARLMHPS

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WML1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.