Factsheet for Solyc09g005010.2.1

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 29145071

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400068505	Potato	cytosol	86.41	99.08
VIT_08s0058g00270.t01	Wine grape	cytosol	68.03	78.1
Bra029733.1-P	Field mustard	cytosol	64.04	73.51
CDY44668	Canola	cytosol	64.04	73.42
CDY53085	Canola	cytosol	63.94	73.31
AT3G08947.1	Thale cress	cytosol	47.15	71.84
GSMUA_Achr5P28110_001	Banana	cytosol	59.54	70.87
GSMUA_Achr8P01910_001	Banana	cytosol	56.84	70.86
GSMUA_Achr10P...	Banana	cytosol	58.74	69.92
Os05t0353400-01	Rice	cytosol, plasma membrane, plastid	60.54	69.82
EES19347	Sorghum	cytosol	59.64	68.62
HORVU1Hr1G060180.2	Barley	cytosol	59.44	68.55
TraesCS1D01G224400.2	Wheat	golgi	59.34	68.43
Zm00001d038021_P001	Maize	plastid	60.04	68.37
TraesCS1A01G222800.2	Wheat	golgi, unclear	59.24	68.32
TraesCS1B01G236100.3	Wheat	cytosol	59.34	68.28
EES13277	Sorghum	cytosol	49.85	68.08
Zm00001d010512_P001	Maize	plastid	58.74	67.12
TraesCS1A01G065600.1	Wheat	cytosol	57.54	66.28
TraesCS1B01G083800.1	Wheat	cytosol	56.84	65.48
TraesCS1D01G066600.1	Wheat	cytosol	57.34	65.38
Os03t0294600-01	Rice	cytosol	24.18	65.23
TraesCS4B01G192500.1	Wheat	endoplasmic reticulum	56.74	64.4
TraesCS4D01G193700.1	Wheat	endoplasmic reticulum	56.64	64.29
TraesCS4A01G111400.1	Wheat	endoplasmic reticulum	56.64	64.29
Solyc06g052030.2.1	Tomato	plastid	50.25	64.24
HORVU1Hr1G013580.2	Barley	cytosol, plastid	57.84	60.06
HORVU4Hr1G055910.2	Barley	cytosol, plastid	57.34	59.36
Solyc03g082940.2.1	Tomato	plastid	56.44	59.22
TraesCS1A01G065000.1	Wheat	cytosol	18.98	56.05
TraesCS7B01G222000.1	Wheat	cytosol	39.76	48.01
TraesCS5D01G042900.2	Wheat	cytosol	36.36	43.18
TraesCS3D01G318400.1	Wheat	cytosol, peroxisome, plastid	27.87	42.79
TraesCS5B01G034200.1	Wheat	cytosol	35.36	42.7
TraesCS5D01G057000.1	Wheat	cytosol	36.06	40.7
TraesCS5B01G051300.1	Wheat	cytosol	35.56	40.14
TraesCS5D01G022500.1	Wheat	cytosol	28.27	39.86
TraesCS3A01G325000.1	Wheat	cytosol	19.88	38.27
TraesCS2D01G434400.1	Wheat	cytosol	17.68	35.76
CDY28068	Canola	cytosol	16.98	35.12
TraesCS2D01G341200.1	Wheat	cytosol	30.67	34.42
TraesCS2A01G435400.1	Wheat	cytosol	26.57	33.33
TraesCS2B01G362200.1	Wheat	cytosol	22.98	33.05
TraesCS2B01G506500.1	Wheat	cytosol	29.57	32.74
TraesCS2D01G480800.1	Wheat	cytosol	29.17	32.41
TraesCS2D01G480100.1	Wheat	cytosol	29.37	31.61
TraesCS2B01G505600.1	Wheat	cytosol	29.07	31.09
Bra029635.1-P	Field mustard	cytosol	6.99	28.34
Solyc01g111780.2.1	Tomato	nucleus, plastid	16.38	18.43

Protein Annotations

Gene3D:1.10.10.60	Gene3D:1.25.10.10	MapMan:15.5.3.13	MapMan:23.5.1.2.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0000060	GO:GO:0003674	GO:GO:0003676	GO:GO:0003677	GO:GO:0005215	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005635
GO:GO:0005737	GO:GO:0006607	GO:GO:0006610	GO:GO:0006810	GO:GO:0006886	GO:GO:0006913
GO:GO:0008139	GO:GO:0008150	GO:GO:0008536	GO:GO:0008565	GO:GO:0016020	GO:GO:0031965
GO:GO:0034399	InterPro:Homeobox-like_sf	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	UniProt:K4CPZ1
InterPro:KPNB1_plant	PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF44
SMART:SM00913	SUPFAM:SSF46689	SUPFAM:SSF48371	EnsemblPlantsGene:Solyc09g005010.2	EnsemblPlants:Solyc09g005010.2.1	UniParc:UPI000276ACFF
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr9:-:8818..14638

Molecular Weight (calculated)

110948.0 Da

IEP (calculated)

4.505

GRAVY (calculated)

-0.053

Length

1001 amino acids

Sequence
(BLAST)

0001: MFEFGERIGW ELQNVDEKLI NDFCSRIGVK KRVLKVWLHN NNKKKKNHQP TTDTVPEGAI IHNQPTIDIL PEDAIHKILS NVNYMEASRM IILSRACLKA
0101: WLTQPNLLFI ACSGAEERAE WSSTRGNNMA VEITQFLLAA QSADAKIRTE AESNLSQFRE QNLPGFFLSL AVELSNDGKP TESRRLAGIV LKNSLDAKET
0201: VRKQQLVQQW LTIDSSCKSQ IKSLLLSCLG SSVREASHTA SQVIAKIASI EVPQKQWPEL IGSLLVNMTQ QGSPASVKQA TLETLGYVCE EISHHDLVQD
0301: EVNSVLTAVV QGMNVEEESV EVRLAATRAL YNALDFAQTN FDNEMERNYI MKVICEAATA KEGQLRQAAF ECLVSIASTY YELLEPYMQA LFQLTAKAVK
0401: EDEEAVALQA IEFWSSICDE EIELQDYEVP DSGDSSVQHS RFIEKALEVL VPMLLETLLK QDEEQDQDDD IWNLAMAGGT CLGLVARTVG DAVVPLVMPF
0501: VEANIMKPDW RSREAAIYAF GSILEGPSIE KLSPMVHAGL KHLLDAMKDN NEHIRDTTAW TLSRIFELLH TPASGFSVIT PANLQQIVEV LLESIKDVPH
0601: VAEKVCGAIY FLSQGYEDAG TSSSLLTPFI TQIISSLITT ADRTDSGSKL RTTAYETLNE VVRCSNLSET SQIINHLCPV IMDKLAQTFE LQILSSDDRE
0701: KQGDLQASLC GVLQVIIQKL SSADETKAII LQVADQIMTL FLKVFACRSS TVHEEAMLAI GALAYATGSD FLKYMPEFYK YIEMGLQNFE EYQVCSISVG
0801: VVGDICRALD DKILPYCDGI MTLLLKDLSS GELNRSVKPP IFSCFGDIAL AIGEHFEKYL QYALPMMQSA AQMCAQLDNS DDEMLEYGNQ LRRSIFEAYS
0901: GLLQGFKSTK ANLMLPHAPH LLQFIELVAK DSPRDESVTK AAVAVLGDLA DALGSSAKTI FKDPAFLEQL LGECLQSDDE QLKETATWTQ GMIGRAFSVC
1001: G

Best Arabidopsis Sequence Match ( AT5G53480.1 )
(BLAST)

001: MAMEVTQLLI NAQSIDGTVR KHAEESLKQF QEQNLAGFLL SLAGELANDE KPVDSRKLAG LVLKNALDAK EQHRKYELVQ RWLALDMSTK SQIRAFLLKT
101: LSAPVPDVRS TASQVIAKVA GIELPQKQWP ELIVSLLSNI HQLPAHVKQA TLETLGYLCE EVSPDVVEQE HVNKILTAVV QGMNAAEGNT DVRLAATRAL
201: YMALGFAQAN FNNDMERDYI MRVVCEATLS PEVKIRQAAF ECLVSIASTY YEKLAHYMQD IFNITAKAVR EDDESVALQA IEFWSSICDE EIDILEEYGG
301: EFAGDSDVPC FYFTKQALPG LVPLLLETLL KQEEDQDLDE GAWNIAMAGG TCLGLVARAV GDDIVPHVMP FIEEKISKPD WREREAATYA FGSILEGPSA
401: DKLMAIVNAA LTFMLNALTN DPSNHVKDTT AWTLGRIFEF LHGSTIETPI INQANCQQII TVLIQSMNDA PNVAEKACGA LYFLAQGYED IGPSSPLTPF
501: FQEIIKSLLA VAHREDATES RLRTAAYEAL NEVVRCSTDE TSTMVLQLVP VIMMELHNTL EGEKLSLDER EKQNELQGLL CGCLQVIIQK LGSEPTKSKF
601: MEYADQMMGL FLRVFGCRSA TAHEEAMLAI GALAYAAGPN FAKYMPEFYK YLEMGLQNFE EYQVCAVTVG VVGDVCRALE DKILPYCDGI MTQLLKDLSS
701: NQLHRSVKPP IFSCFGDIAL AIGEDFDKYW RYSMPMLQSA AELSAHSAGA DDEMTEYTNS LRNGILEAYS GIFQGFKNSA KTQLLIPFAP HILQFLDSIY
801: MEKDMDEVVM KTAIGVLGDL ADTLGSHVGG LIQQSVSSKE FLNECLSSED HTIKEAAEWA KHAITRAISV

Arabidopsis Description

KPNB1Importin subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.