Factsheet for Os05t0353400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

plastid 1
cytosol 3
nucleus 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18260611
plastid: 27992503

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 18260611 doi

SH Natera, KL Ford, AM Cassin, JH Patterson, EJ Newbigin, A Bacic

Plant Cell Biology Research Centre, VIC, Australia. s.natera@unimelb.edu.au

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G224400.2	Wheat	golgi	91.71	91.71
TraesCS1B01G236100.3	Wheat	cytosol	91.71	91.49
TraesCS1A01G222800.2	Wheat	golgi, unclear	91.36	91.36
HORVU1Hr1G060180.2	Barley	cytosol	90.78	90.78
EES19347	Sorghum	cytosol	89.75	89.54
Zm00001d038021_P001	Maize	plastid	89.98	88.85
EES13277	Sorghum	cytosol	75.0	88.81
Zm00001d010512_P001	Maize	plastid	88.13	87.33
TraesCS1B01G083800.1	Wheat	cytosol	85.37	85.27
TraesCS1A01G065600.1	Wheat	cytosol	85.14	85.04
TraesCS1D01G066600.1	Wheat	cytosol	85.37	84.4
HORVU1Hr1G013580.2	Barley	cytosol, plastid	85.6	77.07
VIT_08s0058g00270.t01	Wine grape	cytosol	70.39	70.07
PGSC0003DMT400068505	Potato	cytosol	69.59	69.19
CDY53085	Canola	cytosol	68.32	67.93
Bra029733.1-P	Field mustard	cytosol	68.2	67.89
CDY44668	Canola	cytosol	68.2	67.81
AT3G08947.1	Thale cress	cytosol	50.46	66.67
TraesCS1A01G065000.1	Wheat	cytosol	25.81	66.08
Os03t0294600-01	Rice	cytosol	27.77	64.96
Os12t0568800-01	Rice	plasma membrane	50.92	62.87
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	69.82	60.54
TraesCS7B01G222000.1	Wheat	cytosol	54.15	56.69
TraesCS5D01G042900.2	Wheat	cytosol	49.31	50.77
TraesCS5B01G034200.1	Wheat	cytosol	48.16	50.42
TraesCS3D01G318400.1	Wheat	cytosol, peroxisome, plastid	37.67	50.15
TraesCS5D01G022500.1	Wheat	cytosol	39.29	48.03
TraesCS5D01G057000.1	Wheat	cytosol	47.81	46.79
TraesCS5B01G051300.1	Wheat	cytosol	47.23	46.22
TraesCS3A01G325000.1	Wheat	cytosol	26.73	44.62
TraesCS2D01G434400.1	Wheat	cytosol	24.08	42.22
TraesCS2B01G362200.1	Wheat	cytosol	32.83	40.95
TraesCS2D01G341200.1	Wheat	cytosol	41.94	40.81
TraesCS2A01G435400.1	Wheat	cytosol	36.41	39.6
TraesCS2B01G506500.1	Wheat	cytosol	39.75	38.16
TraesCS2D01G480800.1	Wheat	cytosol	39.52	38.07
TraesCS2D01G480100.1	Wheat	cytosol	40.09	37.42
TraesCS2B01G505600.1	Wheat	cytosol	39.63	36.75
CDY28068	Canola	cytosol	19.93	35.74
Bra029635.1-P	Field mustard	cytosol	8.06	28.34
Os04t0691500-01	Rice	cytosol, plasma membrane	17.74	20.05
Os04t0691600-02	Rice	plastid	0.35	2.07

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.1	EntrezGene:4338508	ProteinID:AAV43878.1	EMBL:AB011270	EMBL:AK065625
InterPro:ARM-like	InterPro:ARM-type_fold	ProteinID:BAF17196.1	ProteinID:BAS93551.1	ProteinID:EEE63373.1	GO:GO:0000060
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0005635	GO:GO:0005737	GO:GO:0006607	GO:GO:0006610
GO:GO:0006810	GO:GO:0006886	GO:GO:0006913	GO:GO:0008139	GO:GO:0008150	GO:GO:0008536
GO:GO:0008565	GO:GO:0016020	GO:GO:0031965	GO:GO:0034399	InterPro:IPR001494	InterPro:IPR011989
InterPro:Importin-beta_N	InterPro:KPNB1_plant	EnsemblPlantsGene:Os05g0353400	EnsemblPlants:Os05t0353400-01	PFAM:PF03810	PFAM:PF13513
PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF44	UniProt:Q9ZWR5	SMART:SM00913	SUPFAM:SSF48371
UniParc:UPI000009C8B8	RefSeq:XP_015639277.1	RefSeq:XP_015639278.1	RefSeq:XP_015639279.1	RefSeq:XP_015639280.1	SEG:seg

Description

beta subunit of importin, importin beta, importin beta 1, importin beta1Armadillo-like helical domain containing protein. (Os05t0353400-01);Similar to Importin beta-like protein (Fragment). (Os05t0353400-02)

Coordinates

chr5:+:16696800..16701565

Molecular Weight (calculated)

95664.5 Da

IEP (calculated)

4.392

GRAVY (calculated)

0.019

Length

868 amino acids

Sequence
(BLAST)

001: MNITQILLSA QSADGNLRVV AEGNLKQFQE QNLPNFLLSL SVELSDNEKP PESRRLAGII LKNSLDAKDS AKKELLIQQW VSLDPSIKQK IKESLLITLG
101: SSVHDARHTS SQVIAKVASI EIPRREWQEL IAKLLGNMTQ QGAPAPLKQA TLEALGYVCE EISPEHLEQD QVNAVLTAVV QGMNQTELSP EVRLAAVKAL
201: YNALDFAESN FANEMERNYI MKVICDTAVS KEVEIRQAAF ECLVAIASTY YVHLDPYMQT IFNLTANAVK GDEEAVALQA IEFWSTICDE EIELQEEYEG
301: SDDANSTVNY RFIEKALPSL VPMLLETLLK QEEDQDQDDN VWNISMSGGT CLGLIARTVG DAIVPLVMPF VEGNITKPDW HCREAATFAF GSILEGPSVE
401: KLAPLVQAGF DFLLNTTKDP NSQVRDTTAW TLGRVFELLH SPASANPIIT SANLTRIMTV LLESSKDVPN VAEKVCGAIY FLAQGYEDAE SISSVLTPFL
501: PNLIAALLSA ADRADTTHFR LRASAYEALN EIVRVSNISE TSGIIGQLLQ EIMRRLNLTF DLHILSSGDK EKQSDLQALL CGVLQVIIQK LSSSDAKSII
601: AQTADQLMFL FLHVFACHSS TVHEEAMLAI GALAYATGTD FVKYMPEFFK YLEAGLQNYE EYQVCSISVG VVGDICRALE DKILPFCDGI MTVLLKDLSN
701: SMLNRSVKPP IFSCFGDIAL AIGDNFEKYL PYAMPMLQGA AELLAVLDHT DEDMVDYGNQ LRRGIFEAYS GILQGIKGAK AQLMIPYASH LLQFTEAVYK
801: DRSRDESVTK AAVAVLGDLA DTLGSSSKDL FKSNLFHVEF LRECHDLDDE VRDTASWAQG MINQALVS

Best Arabidopsis Sequence Match ( AT5G53480.1 )
(BLAST)

001: MAMEVTQLLI NAQSIDGTVR KHAEESLKQF QEQNLAGFLL SLAGELANDE KPVDSRKLAG LVLKNALDAK EQHRKYELVQ RWLALDMSTK SQIRAFLLKT
101: LSAPVPDVRS TASQVIAKVA GIELPQKQWP ELIVSLLSNI HQLPAHVKQA TLETLGYLCE EVSPDVVEQE HVNKILTAVV QGMNAAEGNT DVRLAATRAL
201: YMALGFAQAN FNNDMERDYI MRVVCEATLS PEVKIRQAAF ECLVSIASTY YEKLAHYMQD IFNITAKAVR EDDESVALQA IEFWSSICDE EIDILEEYGG
301: EFAGDSDVPC FYFTKQALPG LVPLLLETLL KQEEDQDLDE GAWNIAMAGG TCLGLVARAV GDDIVPHVMP FIEEKISKPD WREREAATYA FGSILEGPSA
401: DKLMAIVNAA LTFMLNALTN DPSNHVKDTT AWTLGRIFEF LHGSTIETPI INQANCQQII TVLIQSMNDA PNVAEKACGA LYFLAQGYED IGPSSPLTPF
501: FQEIIKSLLA VAHREDATES RLRTAAYEAL NEVVRCSTDE TSTMVLQLVP VIMMELHNTL EGEKLSLDER EKQNELQGLL CGCLQVIIQK LGSEPTKSKF
601: MEYADQMMGL FLRVFGCRSA TAHEEAMLAI GALAYAAGPN FAKYMPEFYK YLEMGLQNFE EYQVCAVTVG VVGDVCRALE DKILPYCDGI MTQLLKDLSS
701: NQLHRSVKPP IFSCFGDIAL AIGEDFDKYW RYSMPMLQSA AELSAHSAGA DDEMTEYTNS LRNGILEAYS GIFQGFKNSA KTQLLIPFAP HILQFLDSIY
801: MEKDMDEVVM KTAIGVLGDL ADTLGSHVGG LIQQSVSSKE FLNECLSSED HTIKEAAEWA KHAITRAISV

Arabidopsis Description

KPNB1Importin subunit beta-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJD4]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.