Factsheet for Zm00001d038021_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

cytosol 2
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

plastid: 23198870
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES13277	Sorghum	cytosol	79.64	95.5
Zm00001d010512_P001	Maize	plastid	94.65	94.98
Os05t0353400-01	Rice	cytosol, plasma membrane, plastid	88.85	89.98
TraesCS1D01G224400.2	Wheat	golgi	88.28	89.4
TraesCS1A01G222800.2	Wheat	golgi, unclear	88.17	89.29
TraesCS1B01G236100.3	Wheat	cytosol	88.28	89.2
HORVU1Hr1G060180.2	Barley	cytosol	87.26	88.36
TraesCS1A01G065600.1	Wheat	cytosol	82.37	83.31
TraesCS1B01G083800.1	Wheat	cytosol	82.37	83.31
TraesCS1D01G066600.1	Wheat	cytosol	82.94	83.03
HORVU1Hr1G013580.2	Barley	cytosol, plastid	82.03	74.79
VIT_08s0058g00270.t01	Wine grape	cytosol	69.62	70.18
PGSC0003DMT400068505	Potato	cytosol	68.15	68.61
CDY53085	Canola	cytosol	67.12	67.58
Bra029733.1-P	Field mustard	cytosol	67.01	67.55
CDY44668	Canola	cytosol	67.01	67.47
AT3G08947.1	Thale cress	cytosol	49.6	66.36
TraesCS1A01G065000.1	Wheat	cytosol	25.26	65.49
Solyc09g005010.2.1	Tomato	endoplasmic reticulum	68.37	60.04
TraesCS7B01G222000.1	Wheat	cytosol	53.01	56.21
Zm00001d041556_P002	Maize	cytosol	60.98	54.31
TraesCS3D01G318400.1	Wheat	cytosol, peroxisome, plastid	36.97	49.85
Zm00001d030694_P002	Maize	mitochondrion	60.75	49.72
TraesCS5D01G042900.2	Wheat	cytosol	46.76	48.75
TraesCS5B01G034200.1	Wheat	cytosol	45.62	48.37
TraesCS5D01G022500.1	Wheat	cytosol	37.43	46.34
TraesCS5D01G057000.1	Wheat	cytosol	45.51	45.1
TraesCS3A01G325000.1	Wheat	cytosol	26.51	44.81
TraesCS5B01G051300.1	Wheat	cytosol	45.05	44.64
TraesCS2D01G434400.1	Wheat	cytosol	24.35	43.23
TraesCS2D01G341200.1	Wheat	cytosol	40.61	40.02
TraesCS2A01G435400.1	Wheat	cytosol	36.18	39.85
TraesCS2B01G362200.1	Wheat	cytosol	31.51	39.8
TraesCS2D01G480800.1	Wheat	cytosol	39.36	38.4
TraesCS2B01G506500.1	Wheat	cytosol	39.48	38.38
TraesCS2D01G480100.1	Wheat	cytosol	39.14	36.99
TraesCS2B01G505600.1	Wheat	cytosol	38.91	36.54
CDY28068	Canola	cytosol	19.8	35.95
Bra029635.1-P	Field mustard	cytosol	7.85	27.94
Zm00001d026696_P005	Maize	cytosol	19.91	19.66
Zm00001d002936_P010	Maize	cytosol	19.8	19.53

Protein Annotations

Gene3D:1.25.10.10	MapMan:23.5.1.2.1	UniProt:A0A1D6M2S2	ProteinID:AQK85481.1	InterPro:ARM-like	InterPro:ARM-type_fold
GO:GO:0003674	GO:GO:0005215	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006810	GO:GO:0006886	GO:GO:0006913	GO:GO:0008150
GO:GO:0008536	GO:GO:0008565	InterPro:IPR001494	InterPro:IPR011989	InterPro:Importin-beta_N	InterPro:KPNB1_plant
PFAM:PF03810	PFAM:PF13513	PFscan:PS50166	PANTHER:PTHR10527	PANTHER:PTHR10527:SF44	SMART:SM00913
SUPFAM:SSF48371	UniParc:UPI000844E90F	EnsemblPlantsGene:Zm00001d038021	EnsemblPlants:Zm00001d038021_P001	EnsemblPlants:Zm00001d038021_T001	SEG:seg

Description

ARM repeat superfamily protein

Coordinates

chr6:-:145393970..145398983

Molecular Weight (calculated)

96777.9 Da

IEP (calculated)

4.325

GRAVY (calculated)

0.011

Length

879 amino acids

Sequence
(BLAST)

001: MLLFILDTAM DITQVLLAAQ SPDANLRTVA EGNLTQFQEQ NLPNFLLSLS IELSNDEKPP ESRRLAGIIL KNSLDAKDSA KKELLTQQWV SVDPSIKLKI
101: KESLLVTLGS SVHDARHTSS QVIAKVASIE IPRREWQDLI AKLLENMTSP GASAPLKQAT LEALGYVCEE ISPQDLEQDQ VNAVLTAVVQ GMNQAELSPE
201: VRLAAVKALY NALDFAESNF ANEMERNYIM KVVCETAMSK EVEIRQAAFE CLVAIASTYY SHLDPYMQTI FDLTANAVKG DEEPVALQAV EFWSAICDEE
301: IALQDEYEGS EDGNSTVHFR FIEKALPLLV PMLLETLLKQ EEDQDQDDNV WNISMSGGTC LGLISRTVGD AVVPLVMPFV EANITKPDWH CREAATFAFG
401: SILEGPSVEK LAPLVQAGLD FLLNTMNDAN SQVKDTTAWT LGRVFELLHS PAGANPIINN SNLPRIMSVL LESSKDAPNV AEKVCGAIYF LAQGYEDAES
501: MSSVLTPYLP NIIAALLSAA DRADSTHSRL RASAYEALNE IVRVSNIPET SGIIGQLLQE IMRRLNLTFD LHILSSGDKE KQSDLQALLC GVLQVIIQKL
601: SSTDAKSIVS QTADQLMMLF LRVFACHNST VHEEAMLAIG ALAYATGPDF VKYMPNFFTY LEAGLQNYEE YQVCSISVGV VGDICRALED KILPFCDRIM
701: TVLLKDLSSS MLNRSVKPPI FSCFGDIALA IGENFEKYLP YAMPMLQGAA ELLGTLDQSD DDMVDYGNQL RRGIFEAYSG ILQGIKGPKA QLMIPYATHL
801: LQFTEAVFKD RSRDDSVTKA AVAVLGDLAD TLGQSSKDLF KTHLFHVEFL RECQAQQLDD EVRETAQWAQ GMINQAVVS

Best Arabidopsis Sequence Match ( AT3G08947.1 )
(BLAST)

001: MERNYIMKMV CETACSKEAE IRQAAFECLV SIASTYYEVL EHYIQTLFEL TSNAVKGDEE SVSLQAIEFW SSICDEEIDR QEYDSPASGD SSPPHSSFIE
101: KALPHLVQML LETLLKQEED QDHDDDVWNI SMAGGTCLGL VARTVGDHVV PLVMPFVEKN ISSPDWRCRE AATYAFGSIL EGPTIDKLAP MVAAGLEFLL
201: NATKDQNNHV RDTTAWTLSR IFEFLHSPDS GFSVISPENL PRIVSVLLES IKDVPNVAEK VCGAIYNLAQ GYEDSGASSS LLSPYLTEII THLLAAAERT
301: DGAESKLRGA AYETLNEVVR CSNLSEASSI IAHLLPAIMK KLAETMDLPI ISTDDREKQA EVQASLCGVL QVIIQKLSGR EDTKPIIMQS ADDIMRLFLR
401: VFGCHSSSVH EEAMLAIGAL AYATGAEFVK YMPELFKYLQ MGLQNFEEYQ VCSITVGVLG DICRALDEKI LPFCDQIMGL LIQNLQSGAL HRSVKPPIFS
501: CFGDIALAIG AHFERYVAPA VQIMQGAAQV CAQMDTLDEE LMDYANQLRR SIFEAYSGIL QGFKDTKAEL MMPYAQHLLQ FVELVSKDPL RDESVTKAAV
601: AAMGDLADVV GENTKQLFQN FTFFGEFLNE CLESEDEDLK VTARWTQGMI ARLMHPS

Arabidopsis Description

ARM repeat superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q0WML1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.