Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 2
- mitochondrion 1
- plasma membrane 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0038g02830.t01 | Wine grape | cytosol | 79.82 | 79.02 |
| HORVU2Hr1G126610.7 | Barley | cytosol | 70.8 | 71.04 |
| Os04t0691500-01 | Rice | cytosol, plasma membrane | 61.44 | 70.96 |
| Zm00001d002936_P010 | Maize | cytosol | 71.25 | 70.93 |
| EES11709 | Sorghum | cytosol | 70.91 | 70.75 |
| TraesCS2A01G562500.1 | Wheat | golgi | 70.91 | 70.12 |
| TraesCS2B01G624100.1 | Wheat | cytosol | 70.91 | 70.12 |
| TraesCS2D01G572700.1 | Wheat | cytosol | 70.69 | 69.9 |
| Zm00001d026696_P005 | Maize | cytosol | 69.79 | 69.55 |
| TraesCS2B01G426000.1 | Wheat | cytosol | 16.46 | 40.11 |
| TraesCS3A01G329100.1 | Wheat | cytosol, mitochondrion | 36.87 | 33.33 |
| VIT_08s0058g00270.t01 | Wine grape | cytosol | 20.07 | 20.41 |
| VIT_16s0098g01630.t01 | Wine grape | plastid | 20.41 | 19.05 |
| VIT_10s0092g00320.t01 | Wine grape | cytosol | 0.56 | 12.2 |
| Os04t0691600-02 | Rice | plastid | 0.9 | 5.52 |
Protein Annotations
| Gene3D:1.25.10.10 | EntrezGene:100245339 | wikigene:100245339 | MapMan:23.5.1.2.2 | InterPro:ARM-like | InterPro:ARM-type_fold |
| ProteinID:CBI18918 | ProteinID:CBI18918.3 | UniProt:E0CQW4 | EMBL:FN595227 | GO:GO:0000060 | GO:GO:0003674 |
| GO:GO:0005215 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005635 | GO:GO:0005737 | GO:GO:0006607 | GO:GO:0006610 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008139 | GO:GO:0008150 | GO:GO:0008536 | GO:GO:0008565 | GO:GO:0016020 |
| GO:GO:0031965 | GO:GO:0034399 | InterPro:IPR001494 | InterPro:IPR011989 | InterPro:Importin-beta_N | EntrezGene:LOC100245339 |
| wikigene:LOC100245339 | PFAM:PF03810 | PFAM:PF13513 | PFscan:PS50166 | PANTHER:PTHR10527 | PANTHER:PTHR10527:SF3 |
| SMART:SM00913 | SUPFAM:SSF48371 | UniParc:UPI0001BE1205 | ArrayExpress:VIT_18s0001g00910 | EnsemblPlantsGene:VIT_18s0001g00910 | EnsemblPlants:VIT_18s0001g00910.t01 |
| RefSeq:XP_002284755 | RefSeq:XP_002284755.1 | RefSeq:XP_010664130.1 | SEG:seg | : | : |
Description
No Description!
Coordinates
chr18:-:1623751..1667354
Molecular Weight (calculated)
98651.2 Da
IEP (calculated)
4.769
GRAVY (calculated)
0.079
Length
887 amino acids
Sequence
(BLAST)
(BLAST)
001: MAWRPQEEGL GEICGLLEQH ISPTSDKSVI WKQLQHYKQF SDFNNYLAFI FAHAEGKSVE IRQAAGLLLK NNLRSSFRTL DPAHQQYIKS ELLPCLGAAD
101: KHIRSTVGTI ITVIVQQGRI FGWPELLQAL VHCLDSNDLN LMEGALAALL KICEDIPQEL DSEIPGLTER PIDAFLPRLF QLFKSPHVSI RKLSLGSINQ
201: FIILMPTALF MSMDQCLQGL FVLAHDPIAE IRKLVCAAFV QLVEVQPAVL EPHMRNIIEY MLQANRDADD EVALESCEFW STYCEAQLDP ELLREFLPHL
301: IPVLLSNMAY AEDDESLADA EEDESIPDRD QDLKPRFHSS RSHGLDDMKD DDDEAVNIWN LRKCSAAGLD ILSDVFGDEI LPTLMPLVQA KLSTSDARSW
401: KEREAAVLAL GAIAEGCVRG LFPHLAEIVA FLIPLLDDKF PLIRSITCWT LSRFSKFIVQ GVGHQKGYDQ FNRVLVGLLQ RVLDTNKRVQ EAACSAFATL
501: EEEAAEELTP HVAIILQHLL CAFGRYQKRN LRILYDAIGT LADAVGGELN QSRYLDILMP PLIAKWQLVS NSDKDLFPLL ECFTSIAQAL GTGFSQFAEP
601: VFQRCISIIQ SQLLAKASVD PLSAAVQYDK EFIVCSLDLL SGLAEGLGSG IESLAAQSNL RDLLLQCCMD DASDVCQSAL ALLGDLARAC PVYLHPRLSE
701: FLNVAARRLN PPEVKETFSV ANNACWAIGE LAVKAHKEVS PIVMTVVSCL APILQQAEGF NKSLVENSAI TLGRLAWVCP EIVALHMEHF MQSWCTALST
801: IRDDIEKEDA FRGLCATVRA NPSGALSSLV HMCKAIASWH HIRSEDLHND ICQVLKGFKQ MLNNGAWEQC MSALEPPEKE KLLNYLI
101: KHIRSTVGTI ITVIVQQGRI FGWPELLQAL VHCLDSNDLN LMEGALAALL KICEDIPQEL DSEIPGLTER PIDAFLPRLF QLFKSPHVSI RKLSLGSINQ
201: FIILMPTALF MSMDQCLQGL FVLAHDPIAE IRKLVCAAFV QLVEVQPAVL EPHMRNIIEY MLQANRDADD EVALESCEFW STYCEAQLDP ELLREFLPHL
301: IPVLLSNMAY AEDDESLADA EEDESIPDRD QDLKPRFHSS RSHGLDDMKD DDDEAVNIWN LRKCSAAGLD ILSDVFGDEI LPTLMPLVQA KLSTSDARSW
401: KEREAAVLAL GAIAEGCVRG LFPHLAEIVA FLIPLLDDKF PLIRSITCWT LSRFSKFIVQ GVGHQKGYDQ FNRVLVGLLQ RVLDTNKRVQ EAACSAFATL
501: EEEAAEELTP HVAIILQHLL CAFGRYQKRN LRILYDAIGT LADAVGGELN QSRYLDILMP PLIAKWQLVS NSDKDLFPLL ECFTSIAQAL GTGFSQFAEP
601: VFQRCISIIQ SQLLAKASVD PLSAAVQYDK EFIVCSLDLL SGLAEGLGSG IESLAAQSNL RDLLLQCCMD DASDVCQSAL ALLGDLARAC PVYLHPRLSE
701: FLNVAARRLN PPEVKETFSV ANNACWAIGE LAVKAHKEVS PIVMTVVSCL APILQQAEGF NKSLVENSAI TLGRLAWVCP EIVALHMEHF MQSWCTALST
801: IRDDIEKEDA FRGLCATVRA NPSGALSSLV HMCKAIASWH HIRSEDLHND ICQVLKGFKQ MLNNGAWEQC MSALEPPEKE KLLNYLI
001: MAATAVVWQP RDDGLAEICS LLEQQISPSS VVDKSQIWKQ LQHFSQFPDF NNYLVFILVR AEGKSVEVRQ AAGLLLKNNL RGAYPSMTQE NQKYIKSELL
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
101: PCLGAADRNI RTTVGTIISV IVNIEGVSGW HELLPALVTC LDSNDLNHMD GAMDALSKIC EDIPHVLDTE VPGLAERPIN IFLPRLLQFF QSPHASLRKL
201: ALGSVNQYII IMPAALYNSL DKYLQGLFVL ANDPVPEVRK LVCAAFVHLT EVLPSSIEPH LRNVMEYMLQ VNRDPDEEVS LEACEFWSAY CDAQLPPENL
301: KEFLPRLIPV LLENMAYADD DESLLDAEED ESQPDRDQDL KPRFHTSRLH GSEDFDDDDD DSFNVWNLRK CSAAAIDVLS NVFGDEILPA LMPLIQKNLS
401: ASGDEAWKQR EAAVLALGAI AEGCMNGLYP HLSEIVAFLL PLLDDKFPLI RSISCWTLSR FGKYLIQESG NPKGYEQFEK VLMGLLRRLL DTNKRVQEAA
501: CSAFATVEED AAEELVPHLG VILQHLMCAF GKYQRRNLRI VYDAIGTLAD SVREELNKPA YLEILMPPLV AKWQQLSNSD KDLFPLLECF TSISQALGVG
601: FAPFAQPVFQ RCMDIIQLQQ LAKVNPASAG AQYDREFIVC SLDLLSGLAE GLGSGIESLV QQSNLRDLLL NCCIDEAADV RQSAFALMGD LARVFPVYLQ
701: PRLLDFLEIA SQQLSANLNR ENLSVANNAC WAIGELAVKV RQEVSPIVAK VVSSLGLILQ HGEGVNKALV ENSAITLGRL AWIRPDLVAP HMDHFMKPWC
801: MALSMVRDDI EKEDAFRGLC AVVKVNPSGG VSSLVFICQA IASWHEIRSE DVQTEVSQVL NGYKHMLGNS WAECLSALDP PVKERLARYQ V
Arabidopsis Description
TRN1transportin 1 [Source:TAIR;Acc:AT2G16950]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.