Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra038436.1-P | Field mustard | nucleus | 99.4 | 99.4 |
| CDY27132 | Canola | nucleus | 99.4 | 99.4 |
| AT1G31750.1 | Thale cress | nucleus | 88.02 | 83.52 |
| AT2G04063.1 | Thale cress | cytosol | 41.92 | 62.5 |
Protein Annotations
| EnsemblPlants:CDY12358 | EnsemblPlantsGene:GSBRNA2T00061540001 | PANTHER:PTHR31248 | ProteinID:CDY12358 | ProteinID:CDY12358.1 | SEG:seg |
| UniParc:UPI0004EB13C8 | UniProt:A0A078FJS7 | MapMan:35.2 | : | : | : |
Description
BnaC08g08470DBnaC08g08470D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FJS7]
Coordinates
chrLK032021:-:69216..70430
Molecular Weight (calculated)
17539.8 Da
IEP (calculated)
10.732
GRAVY (calculated)
-1.138
Length
167 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDKHHEQD KGFFSHHNHP GQGYPPGAYP PPPPGAYPPP HGYPQQGYPP QGYPPQGYPP AAYPPPPGAY PPAGYPGPHR PGLGGGVGGL IAGAATAAAA
101: AMGSHHAGHH GGYGHHHGGK YKKGFFGGGK YKRGKHSMFG GKHKRGKHGM FGGKRGKHGM FGRRKWK
101: AMGSHHAGHH GGYGHHHGGK YKKGFFGGGK YKRGKHSMFG GKHKRGKHGM FGGKRGKHGM FGRRKWK
001: MGKDDHHEQD KRFFSHHNHH GHGYPPGAYP PPPQGAYPPP GGYPPQGYPP PPHGYPPAAY PPPPGAYPPA GYPGPSGPRP GFGGGVGGLI AGAATAAAAA
101: MGGHHAGHHG GYGHHGHGKY KRGFFGGGKY KRGKHSMFGG GKYKRGKHGM FGGKRSKHGM FGGKRGKGMF GRKKWK
101: MGGHHAGHHG GYGHHGHGKY KRGFFGGGKY KRGKHSMFGG GKYKRGKHGM FGGKRSKHGM FGGKRGKGMF GRKKWK
Arabidopsis Description
At1g31750 [Source:UniProtKB/TrEMBL;Acc:Q9C4Z8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.