Factsheet for Bra034018.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005797.1-P
Bra009480.1-P
Bra011357.1-P
Bra012964.1-P
Bra021524.1-P
Bra024295.1-P
Bra027380.1-P
Bra031918.1-P
Bra035933.1-P
Bra036832.1-P
Bra040086.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	Bra021524.1-P	AT3G13990.1	21798944
AT1G67170.1	Bra027380.1-P	AT3G13990.1	21798944
AT1G67170.1	Bra036832.1-P	AT3G51180.1	21798944
AT1G67170.1	Bra011357.1-P	AT4G32570.1	21798944
AT1G67170.1	Bra040086.1-P	AT4G32570.1	21798944
AT1G67170.1	Bra005797.1-P	AT5G04170.1	21798944
AT1G67170.1	Bra009480.1-P	AT5G04170.1	21798944
AT1G67170.1	Bra012964.1-P	AT5G61380.1	21798944
AT1G67170.1	Bra035933.1-P	AT5G61380.1	21798944
AT1G67170.1	Bra024295.1-P	AT5G64430.1	21798944
AT1G67170.1	Bra031918.1-P	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY12623	Canola	nucleus	95.1	91.8
Bra004207.1-P	Field mustard	nucleus	79.74	70.93
AT1G67170.1	Thale cress	nucleus	74.18	63.23
Os02t0192100-01	Rice	mitochondrion	36.6	44.8
VIT_14s0083g00450.t01	Wine grape	mitochondrion	59.48	42.03
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	31.05	39.92
KRH01477	Soybean	nucleus	50.98	38.61
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	48.04	33.95
Solyc02g065630.2.1	Tomato	nucleus	47.06	32.58
PGSC0003DMT400068308	Potato	plastid	47.06	31.86
Bra010043.1-P	Field mustard	nucleus, peroxisome, plasma membrane, plastid	19.61	28.71
HORVU6Hr1G034720.1	Barley	nucleus	40.52	27.25
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	41.83	27.0
TraesCS6D01G159700.1	Wheat	nucleus	41.18	26.98
Bra037981.1-P	Field mustard	nucleus	23.86	26.84
TraesCS6A01G169900.1	Wheat	nucleus	40.85	26.77
Bra027313.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	26.47	24.55
Bra027315.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	26.47	24.4
EES06432	Sorghum	mitochondrion	39.22	24.05
Bra018336.1-P	Field mustard	nucleus	18.95	20.86
Bra014359.1-P	Field mustard	nucleus	20.59	19.21

Protein Annotations

EnsemblPlants:Bra034018.1	EnsemblPlants:Bra034018.1-P	EnsemblPlantsGene:Bra034018	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5
SEG:seg	UniParc:UPI0002545D2E	UniProt:M4EYX6	MapMan:35.1	:	:

Description

AT1G67170 (E=2e-094) | unknown protein

Coordinates

chrA02:+:10174020..10175262

Molecular Weight (calculated)

33843.5 Da

IEP (calculated)

7.749

GRAVY (calculated)

-0.595

Length

306 amino acids

Sequence
(BLAST)

001: MGSNGRVPPP HHMRRPGLPH PEAFASVPSF NMLPPPHLME QKLAAQHGEM QRLAIENQRL AATHGNLRQE LAAAQHELQM LHSQIGSVKS DGEQRMSGLA
101: DKVAKMESEL RKSEALKLEM QEAHAEARSL VVAREELMSK VHHLTQELQK SRSDVQQVPA LMSELDGLRQ EYQQCRATYD YEKKFYNDHI ESLQAMEKNY
201: MTMAMEVQKL QAQLMNSANS DRGAGTMLFC LAPFLYKFCL GYIPPPAPGT ATAPNSIVGT AQYPYQGVAQ PGGYFPPGPG YYFPRGPPPG SSNNTPYGSA
301: ATNAPR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.