Factsheet for Bra004207.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 2
cytosol 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra005797.1-P
Bra009480.1-P
Bra011357.1-P
Bra012964.1-P
Bra021524.1-P
Bra024295.1-P
Bra027380.1-P
Bra031918.1-P
Bra035933.1-P
Bra036832.1-P
Bra040086.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G67170.1	Bra021524.1-P	AT3G13990.1	21798944
AT1G67170.1	Bra027380.1-P	AT3G13990.1	21798944
AT1G67170.1	Bra036832.1-P	AT3G51180.1	21798944
AT1G67170.1	Bra011357.1-P	AT4G32570.1	21798944
AT1G67170.1	Bra040086.1-P	AT4G32570.1	21798944
AT1G67170.1	Bra005797.1-P	AT5G04170.1	21798944
AT1G67170.1	Bra009480.1-P	AT5G04170.1	21798944
AT1G67170.1	Bra012964.1-P	AT5G61380.1	21798944
AT1G67170.1	Bra035933.1-P	AT5G61380.1	21798944
AT1G67170.1	Bra024295.1-P	AT5G64430.1	21798944
AT1G67170.1	Bra031918.1-P	AT5G64430.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96108	Canola	cytosol, mitochondrion, nucleus, plastid	99.13	99.13
CDY01786	Canola	cytosol	95.64	94.54
Bra034018.1-P	Field mustard	nucleus	70.93	79.74
AT1G67170.1	Thale cress	nucleus	75.0	71.87
VIT_14s0083g00450.t01	Wine grape	mitochondrion	59.3	47.11
Os02t0192100-01	Rice	mitochondrion	31.98	44.0
KRH01477	Soybean	nucleus	50.87	43.32
GSMUA_Achr1P15680_001	Banana	endoplasmic reticulum, plasma membrane	27.91	40.34
GSMUA_Achr1P19060_001	Banana	cytosol, mitochondrion, nucleus, plastid	49.13	39.03
Solyc02g065630.2.1	Tomato	nucleus	46.51	36.2
PGSC0003DMT400068308	Potato	plastid	46.51	35.4
HORVU6Hr1G034720.1	Barley	nucleus	40.7	30.77
TraesCS6B01G198100.1	Wheat	extracellular, mitochondrion, nucleus, plastid	41.57	30.17
TraesCS6A01G169900.1	Wheat	nucleus	40.12	29.55
TraesCS6D01G159700.1	Wheat	nucleus	40.12	29.55
Bra037981.1-P	Field mustard	nucleus	22.09	27.94
Bra027313.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	26.45	27.58
Bra027315.1-P	Field mustard	cytosol, mitochondrion, nucleus, peroxisome	26.45	27.41
Bra010043.1-P	Field mustard	nucleus, peroxisome, plasma membrane, plastid	16.57	27.27
EES06432	Sorghum	mitochondrion	38.95	26.85
Bra018336.1-P	Field mustard	nucleus	17.44	21.58
Bra014359.1-P	Field mustard	nucleus	19.19	20.12

Protein Annotations

EnsemblPlants:Bra004207.1	EnsemblPlants:Bra004207.1-P	EnsemblPlantsGene:Bra004207	ncoils:Coil	PANTHER:PTHR33405	PANTHER:PTHR33405:SF5
SEG:seg	UniParc:UPI00025415DD	UniProt:M4CJ23	MapMan:35.1	:	:

Description

AT1G67170 (E=4e-107) | unknown protein

Coordinates

chrA07:+:17422369..17423774

Molecular Weight (calculated)

37889.6 Da

IEP (calculated)

7.494

GRAVY (calculated)

-0.889

Length

344 amino acids

Sequence
(BLAST)

001: MESQGRHPPP HHLRHPLPIM PPPPSAQPAF PPFNNTLPPL QLMEQKLATQ HGEMQRLAIE NQRLAATHGN LRQELAAAQH ELQMLHSQIG SIKSEGEQRM
101: SGLADKVAKM EAELRKSEAL KMEMQEARGE ARGLVVAREE LMSKVHQLTQ EIQKSRGEVQ QVPALMSELD GLRQEYQQCR ATYDYEKKFY NDHIESLQAM
201: EKNYMTMAME VQKLQAQLMN GRAGGAYGNN TNAENDASGH QNGVGYYDEA YGHQGYVPQP AAGTATAPNP AVPTAQYPYQ GGSQPGYFPP RPGYYFPRGP
301: PHGSYDPTRL PAGPQGGQFP PGSSNNTPYG SAATTGPRGN PSRR

Best Arabidopsis Sequence Match ( AT1G67170.1 )
(BLAST)

001: MESKGRIHPS HHHMRRPLPG PGGCIAHPET FGNHGAIPPS AAQGVYPSFN MLPPPEVMEQ KFVAQHGELQ RLAIENQRLG GTHGSLRQEL AAAQHEIQML
101: HAQIGSMKSE REQRMMGLAE KVAKMETELQ KSEAVKLEMQ QARAEARSLV VAREELMSKV HQLTQELQKS RSDVQQIPAL MSELENLRQE YQQCRATYDY
201: EKKFYNDHLE SLQAMEKNYM TMAREVEKLQ AQLMNNANSD RRAGGPYGNN INAEIDASGH QSGNGYYEDA FGPQGYIPQP VAGNATGPNS VVGAAQYPYQ
301: GVTQPGYFPQ RPGYNFPRGP PGSYDPTTRL PTGPYGAPFP PGPSNNTPYA GTHGNPSRR

Arabidopsis Description

FLXL2Protein FLX-like 2 [Source:UniProtKB/Swiss-Prot;Acc:Q84TD8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.